BQ623902

Overview
NameBQ623902
Unique NameBQ623902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623902_ssr425 microsatellite BQ623902_ssr425:425..436. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9569 contig Csv1_Contig9569:1024..1597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 3
Query:  177 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 404
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          

HSP 2 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    6 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 176
            +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:   20 NDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:  177 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 404
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 3
Query:    9 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 404
            D++  +K  ++ K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   28 DSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 3
Query:    3 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 404
            +S T+  +K +I  K G+P  QQRL      L+DG TL+   +   ST+ LV++     + I V+   G +   EV  + T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:   21 NSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Match: UCRP_HUMAN (Interferon-induced 17 kDa protein OS=Homo sapiens GN=ISG15 PE=1 SV=5)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 3
Query:    3 SSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 404
            SS ++  +KA+I  K G+   QQRL    +G  L+D   LA   +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct:   21 SSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157          
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Match: UBD_RAT (Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 3
Query:    6 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 404
            SD +  +   I+ +  +    Q L+   K L+  R L+ Y I KE+T+HL L++         + +      G+   L V  S ++  VK  I++   +PP +Q +   GK+LEDG+ +ADYNI+  S L L     GG
Sbjct:   23 SDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFLTAHCIGG 161          
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  177 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 404
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of BQ623902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
UBL1_SCHPO3.108e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST7.656e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UBD_HUMAN3.217e-1434.06Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_MOUSE9.359e-1434.07Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
UCRP_HUMAN3.932e-1235.04Interferon-induced 17 kDa protein OS=Homo sapiens ... [more]
UBD_RAT5.136e-1230.94Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1[more]
ANUB1_HUMAN3.329e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00982 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00982 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623902 ID=BQ623902; Name=BQ623902; organism=Citrus sinensis; type=EST; length=575bp
AAAGTTCTGACACCATTGACAACGTGAAAGCAAAAATTCAAGACAAGGAG
GGTATCCCACCAGATCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGA
AGATGGAAGGACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCTTC
ACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACACTC
ACTGGGAAAACCATCACGTTGGAGGTTGAGAGTTCGGACACAATTGACAA
TGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAGA
GGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGAT
TACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCCGTGG
AGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGG
TTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAATAACT
ATTTGAAGTTTATTTTGGTTTGTGGTAGTTGAACTCTGTTTCTAAGATAT
TGATATGGTCCCCCTAACCTCCCAT
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