BQ623909

Overview
NameBQ623909
Unique NameBQ623909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.064e-13
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GDL    D+  +   +A  GE  + V+++ N                +GY F++F S   A   L   NG  +PN   +  +LNWA+       +   +       +IFVGDLA +VT+  L E F  RY ST  AK+V D++TG +KGYGFV+F +  EQ
Sbjct:   59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR---DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            G+L Y +D   L   F   G V   +VI N++T +  G+GF+   +   AE+ ++  NG  M +G Q      A  G+ E+    D  P   ++VG+L  DV    L++ F + +     A+VV DR TGR++G+GFV    ESE
Sbjct:   60 GNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDM-DGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 39/136 (28.68%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +  L + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 206          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 39/136 (28.68%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +  L + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 39/136 (28.68%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +  L + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 39/136 (28.68%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +  L + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 39/136 (28.68%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +  L + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.301e-11
Identity = 53/158 (33.54%), Postives = 75/158 (47.47%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG------------TPMPNGEQN--FRLNWASFGAGEKRDDTPD--HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            G+L +  D   L   F   G V  V+VI +K TG+  G+GF+   S+   E   Q FNG             P P   +N  FR N +SF  G +   + D  + ++VG+LA  V D    ET  +       AKVV DR +GR++G+GFV +    E
Sbjct:   92 GNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFREN-SSFRGGSRGGGSFDSSNRVYVGNLAWGV-DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 247          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.699e-11
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            G+L   + E  L   F   G +  +K++ +K    +  Y F+E+     A   LQT NG  + N     ++NWA        DDT    +FVGDL  +V D  L+  F+  +PS     V+ D  TG ++GYGFV F  + +
Sbjct:   80 GNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN-YAFVEYHQSHDANIALQTLNGKQIENNI--VKINWAFQSQQSSSDDT--FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 49/154 (31.82%), Postives = 68/154 (44.16%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG------------TPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            G+L +  D   L   F   G V  V+VI +K TG+  G+GF+   S+   E   Q FNG             P P   +N      S G G        + ++VG+LA  V D    ET  +       AKVV DR +GR++G+GFV +    E
Sbjct:   92 GNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGG---SFDSSNRVYVGNLAWGV-DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241          
The following BLAST results are available for this feature:
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NAM8_YEAST1.064e-1334.16Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
ROC1_SPIOL2.007e-1233.7928 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ELAV2_XENTR7.626e-1228.68ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_RAT7.626e-1228.68ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV2_PONAB7.626e-1228.68ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE7.626e-1228.68ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN7.626e-1228.68ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ROC1_NICPL1.301e-1133.5430 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PUB1_YEAST1.699e-1131.69Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
ROC1_NICSY2.219e-1131.8229 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00989 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623909 ID=BQ623909; Name=BQ623909; organism=Citrus sinensis; type=EST; length=439bp
GGGGACTTGCAGTATTGGATGGATGAGACCTATCTCAACACTTGTTTTGC
ACACACCGGCGAGGTTGTCGCTGTAAAAGTAATTCGTAATAAGCAAACTG
GTCAAATAGAAGGTTATGGATTTATTGAGTTTATTTCGCGTGCTGGTGCT
GAAAGAGTTTTGCAGACATTTAACGGTACCCCTATGCCAAACGGTGAGCA
GAACTTCAGGCTAAACTGGGCATCTTTTGGTGCTGGCGAGAAGCGCGATG
ACACCCCTGACCACACAATATTTGTTGGAGATTTGGCTGCTGACGTTACT
GATTACATGCTTCAAGAGACCTTCAGGGCCCGCTATCCCTCTACTAAAGG
TGCAAAGGTTGTCATTGATAGGCTTACTGGACGCACAAAGGGTTATGGAT
TTGTGAGATTTGGTGATGAAAGTGAACAGCTACCTGCCA
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