BQ623909

Overview
NameBQ623909
Unique NameBQ623909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 38/136 (27.94%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +    + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 178          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 38/136 (27.94%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +    + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 190          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 38/136 (27.94%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +    + F   GE+ + K++R+K TGQ  GYGF+ +I    AE+ + T NG  +    +  ++++A   +   R    D  ++V  L   +T   L++ F ++Y     +++++D++TG ++G GF+RF    E
Sbjct:   57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 42/137 (30.66%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 411
            G+L   + E  +   F+  G   + K+I    +   + Y F+EF     A   L   NG  +   E   ++NWA+  + +K+D +    +FVGDL+ ++T   ++  F A +     A+VV D  TG++KGYGFV F
Sbjct:   14 GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSF 145          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGA--GEKRDDTP-----DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLPA 438
            G+L Y +D   L   F   G V   +VI N+ T Q  G+GF+   +   AE+ ++ +N       + N RL   +  A  GE+ +  P      + I+VG++   + D  L++ F + +     A+VV DR TGR++G+GFV    E+E   A
Sbjct:  141 GNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYN-----RYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDA 287          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 37/136 (27.21%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +  L + F+  GEV + K+IR+K  G   GYGF+ +++   AER + T NG  + +  +  ++++A        +   D  +++  L   +T   +++ F +R+     ++V++D+ TG ++G  F+RF   SE
Sbjct:   31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSE 159          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 37/136 (27.21%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   19 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            M +  L + F+  GEV + K+IR+K  G   GYGF+ +++   AER + T NG  + +  +  ++++A        +   D  +++  L   +T   +++ F +R+     ++V++D+ TG ++G  F+RF   SE
Sbjct:   31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSE 159          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.456e-11
Identity = 49/163 (30.06%), Postives = 74/163 (45.40%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN-------------GTPMPNGEQNF----RLNWAS----FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 426
            G+L + +D   L   F   G V  V+VI +K TG+  G+GF+   S +  E   Q FN             G P P  E  F    R ++ S    +G G        + ++VG+L+  V D  L+  F +       A+V+ DR +GR+KG+GFV +    E
Sbjct:   96 GNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257          
The following BLAST results are available for this feature:
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ELAV4_RAT2.219e-1127.94ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE2.219e-1127.94ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN2.219e-1127.94ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
TIAR_HUMAN3.785e-1130.66Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
ROC4_NICSY4.943e-1130.7231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV1_MOUSE4.943e-1127.21ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
ELAV1_HUMAN4.943e-1127.21ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ROC1_ARATH6.456e-1130.06Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00989 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623909 ID=BQ623909; Name=BQ623909; organism=Citrus sinensis; type=EST; length=439bp
GGGGACTTGCAGTATTGGATGGATGAGACCTATCTCAACACTTGTTTTGC
ACACACCGGCGAGGTTGTCGCTGTAAAAGTAATTCGTAATAAGCAAACTG
GTCAAATAGAAGGTTATGGATTTATTGAGTTTATTTCGCGTGCTGGTGCT
GAAAGAGTTTTGCAGACATTTAACGGTACCCCTATGCCAAACGGTGAGCA
GAACTTCAGGCTAAACTGGGCATCTTTTGGTGCTGGCGAGAAGCGCGATG
ACACCCCTGACCACACAATATTTGTTGGAGATTTGGCTGCTGACGTTACT
GATTACATGCTTCAAGAGACCTTCAGGGCCCGCTATCCCTCTACTAAAGG
TGCAAAGGTTGTCATTGATAGGCTTACTGGACGCACAAAGGGTTATGGAT
TTGTGAGATTTGGTGATGAAAGTGAACAGCTACCTGCCA
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