BQ623948 | Citrus Genome Database

Overview


Name	BQ623948
Unique Name	BQ623948
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	575

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.336e-52
Identity = 105/191 (54.97%), Postives = 130/191 (68.06%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +                 RA+                  Q  +EI+SL++G+DF   +TRARFEELN DLFR T+ PV+KA+ DA L+K QI EIVLVGGSTRIPK+Q+LL+D+F+GKE NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDV PL+LGIET GGVMT LI
Sbjct:  227 GDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLI 417

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.336e-52
Identity = 105/191 (54.97%), Postives = 130/191 (68.06%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +                 RA+                  Q  +EI+SL++G+DF   +TRARFEELN DLFR T+ PV+KA+ DA L+K QI EIVLVGGSTRIPK+Q+LL+D+F+GKE NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDV PL+LGIET GGVMT LI
Sbjct:  227 GDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLI 417

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.336e-52
Identity = 105/191 (54.97%), Postives = 130/191 (68.06%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +                 RA+                  Q  +EI+SL++G+DF   +TRARFEELN DLFR T+ PV+KA+ DA L+K QI EIVLVGGSTRIPK+Q+LL+D+F+GKE NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDV PL+LGIET GGVMT LI
Sbjct:  227 GDTHLGGEDFDNRMVSHLAEEFKRKHKKDIAPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRVTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLI 417

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.336e-52
Identity = 105/191 (54.97%), Postives = 132/191 (69.11%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL +DLFR T+ PV+KA+ DA ++K QI ++VLVGGSTRIPK+Q+LL+D+F+G+E NK +NPDEAVAYGAAVQ  ILSG+     +D+LLLDVAPL+LGIET GGVMT LI
Sbjct:  226 GDTHLGGEDFDNRMVNHFVEEFKRKHKKDISQNKRALRRLRTACERAKRTLSSSSQASIEIDSLFEGIDFYTSVTRARFEELCSDLFRGTLEPVEKALRDAKMDKGQIHDVVLVGGSTRIPKIQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILSGDTSGNVQDLLLLDVAPLSLGIETAGGVMTALI 416

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.336e-52
Identity = 104/191 (54.45%), Postives = 133/191 (69.63%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEE+ +DLFR T+ PV+KA+ DA ++K QI ++VLVGGSTRIPKVQ+LL+D+F+G+E NK +NPDEAVAYGAA+Q  ILSG+  +  +D+LLLDVAPL+LGIET GGVMT LI
Sbjct:  226 GDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRALRRLRTACERAKRTLSSSSQASIEIDSLFEGIDFYTSITRARFEEMCSDLFRGTLEPVEKALRDAKMDKAQIHDVVLVGGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAIQAAILSGDKSENVQDLLLLDVAPLSLGIETAGGVMTALI 416

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.279e-52
Identity = 104/191 (54.45%), Postives = 131/191 (68.59%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SL++GIDF   +TRARFEELN DLFRK M PV+K + DA ++K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDEAVAYGAAVQ  ILSGEG ++ +D+LLLDV PL+LG+ET GG MT LI
Sbjct:  230 GDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGGMTVLI 420

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.279e-52
Identity = 108/191 (56.54%), Postives = 129/191 (67.54%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL  DLFR  + PV K ++D+ L+K  I EIVLVGGSTRIPKVQQLL+D+F+GKE NK +NPDEAVAYGAAVQ  ILS EGG +  DILLLDVAPL++G+ET GGVMT LI
Sbjct:  223 GDTHLGGEDFDNRLVNHFVDEFKRKHKKDLMTNQRALRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRGCLDPVDKVLKDSKLDKKTIHEIVLVGGSTRIPKVQQLLQDHFNGKELNKSINPDEAVAYGAAVQAAILSNEGGAKVADILLLDVAPLSMGLETAGGVMTTLI 413

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.279e-52
Identity = 104/191 (54.45%), Postives = 137/191 (71.73%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD RV+ +F                +A+                Q   R+EI+S  DGIDFSE L+RA+FEELN DLF+KT+ PV++ ++DA ++ ++ID++V VGGSTRIPKVQ+L++++F+GK+ +KG+NPDEAVA+GAAVQGG+LSGE G E  DI+L+DV PLTLGIET GGVMT LI
Sbjct:  259 GDTHLGGEDFDYRVVRHFIKVFKKKHGIDISDNSKALAKLKREVEKAKRTLSSQMSTRIEIDSFVDGIDFSESLSRAKFEELNMDLFKKTLKPVQQVLDDAKMKPDEIDDVVFVGGSTRIPKVQELIENFFNGKKISKGINPDEAVAFGAAVQGGVLSGEEGVE--DIVLIDVNPLTLGIETSGGVMTTLI 447

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.976e-52
Identity = 106/191 (55.50%), Postives = 130/191 (68.06%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL  DLFR  + PV+K ++D+ L+K  I EIVLVGGSTRIPKVQQLL+++F+GKE NK +NPDEAVAYGAAVQ  ILS EGG +  D+LLLDVAPL++G+ET GGVMT LI
Sbjct:  222 GDTHLGGEDFDNRLVSHFVDEFKRKHKKDIMGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRGCLDPVEKVLKDSKLDKKSIHEIVLVGGSTRIPKVQQLLQEFFNGKELNKSINPDEAVAYGAAVQAAILSNEGGAKVADLLLLDVAPLSMGLETAGGVMTTLI 412

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 3.887e-52
Identity = 104/191 (54.45%), Postives = 133/191 (69.63%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+G+DF   +TRARFEEL +DLFR T+ PV+KA+ DA L+K QI ++VLVGGSTRIPKVQ+LL+D+F+GKE NK +NPDEAVAYGAAVQ  +L G+  ++ +D+LLLDVAPL+LG+ET GGVMT LI
Sbjct:  226 GDTHLGGEDFDNRLVNHFMEEFRRKHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDVVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDLLLLDVAPLSLGLETAGGVMTTLI 416

The following BLAST results are available for this feature:

BLAST of BQ623948 vs. ExPASy Swiss-Prot

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP72_MOUSE	1.336e-52	54.97	Heat shock-related 70 kDa protein 2 OS=Mus musculu...	[more]
HSP72_HUMAN	1.336e-52	54.97	Heat shock-related 70 kDa protein 2 OS=Homo sapien...	[more]
HSP72_CAPHI	1.336e-52	54.97	Heat shock-related 70 kDa protein 2 OS=Capra hircu...	[more]
HSP71_ORYLA	1.336e-52	54.97	Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=...	[more]
HSP70_ONCTS	1.336e-52	54.45	Heat shock 70 kDa protein OS=Oncorhynchus tschawyt...	[more]
HSP7C_PETHY	2.279e-52	54.45	Heat shock cognate 70 kDa protein OS=Petunia hybri...	[more]
HS7C2_DICDI	2.279e-52	56.54	Heat shock cognate 70 kDa protein 2 OS=Dictyosteli...	[more]
GRP78_PICAN	2.279e-52	54.45	78 kDa glucose-regulated protein homolog OS=Pichia...	[more]
HS7C1_DICDI	2.976e-52	55.50	Heat shock cognate 70 kDa protein 1 OS=Dictyosteli...	[more]
HSP76_HUMAN	3.887e-52	54.45	Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_01039 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01039 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623948 ID=BQ623948; Name=BQ623948; organism=Citrus sinensis; type=EST; length=575bp
ATGGAGACACTCATTTGGGAGGTGAGGACTTTGATCAGAGGGTTATGGAG
TACTTTATTAAATTGATCAAGAAGAAGCATGGAAAGGATATCAGCAAGGA
CAAAAGGGCTATTGGCAAGCTCAGGAGGGAAGCTGAACGTGCTAAGAGAG
CTCTCAGCAGCCAGCACCAGGTCCGTGTTGAAATTGAGTCACTTTTCGAT
GGCATTGACTTCTCCGAGCCACTTACTAGGGCTCGCTTTGAGGAGTTGAA
TAATGACTTGTTCAGAAAGACCATGGGACCTGTGAAGAAGGCCATGGAAG
ATGCTGGATTAGAGAAGAATCAGATTGATGAGATTGTTCTTGTTGGTGGT
AGTACTAGGATTCCCAAGGTTCAACAGCTTCTCAAAGACTATTTTGATGG
TAAAGAGCCTAACAAGGGTGTGAACCCAGATGAGGCAGTTGCTTATGGTG
CTGCTGTACAAGGTGGCATCTTGAGTGGTGAAGGTGGTGATGAAACCAAA
GATATCCTTCTCTTGGATGTGGCTCCACTCACCCTTGGTATCGAGACAGT
TGGTGGGGTGATGACCAAGTTGATC