BQ623948 | Citrus Genome Database

Overview


Name	BQ623948
Unique Name	BQ623948
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	575

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 3.887e-52
Identity = 102/191 (53.40%), Postives = 133/191 (69.63%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL  DLFRKTM PV++ + D+ ++K  ++EIVLVGGSTRIP+VQ+L+ D+F+GKEP K +NPDEAVAYGAAVQ  +L+G+  ++T+D+LLLDVAPL++GIET GGVMT LI
Sbjct:  222 GDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLI 412

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 5.076e-52
Identity = 107/191 (56.02%), Postives = 129/191 (67.54%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+G DF   +TRARFEELN DLFR TM PV+KA+ DA L+K+ I +IVLVGGSTRIPKVQ+LL+D F+GKE NK +NPDEAVAYGAAVQ  IL G+   E +D+LLLDV PL+LGIET GGVM+ LI
Sbjct:  224 GDTHLGGEDFDNRLVTHFVQEFKRKHKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFYTSITRARFEELNADLFRSTMDPVEKALRDAKLDKSVIHDIVLVGGSTRIPKVQRLLQDLFNGKELNKSINPDEAVAYGAAVQAAILHGDKSQEVQDLLLLDVTPLSLGIETAGGVMSVLI 414

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 103/191 (53.93%), Postives = 133/191 (69.63%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+G+DF   +TRARFEEL +DLFR T+ PV+KA+ DA L+K QI ++VLVGGSTRIP+VQ+LL+D+F+GKE NK +NPDEAVAYGAAVQ  +L G+  ++ +D+LLLDVAPL+LG+ET GGVMT LI
Sbjct:  226 GDTHLGGEDFDNRLVNHFVEEFRRKHRKDLSWNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDVVLVGGSTRIPRVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVRDLLLLDVAPLSLGLETAGGVMTTLI 416

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 104/191 (54.45%), Postives = 129/191 (67.54%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD  ++ +                 RA+                  Q  +EI+SL++G+DF   +TRARFEELN DLFR T+ PV+KA+ DA L+K QI EIVLVGGSTRIPK+Q+LL+D+F+GKE NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDV PL+LGIET GGVMT LI
Sbjct:  227 GDTHLGGEDFDNSMVSHLAEEFKRKHKKDIAPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLI 417

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 102/191 (53.40%), Postives = 132/191 (69.11%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SL++GIDF   +TRARFEEL  DLFR TM PV+K + D+ ++K+ ++EIVLVGGSTRIP++Q+L+ D+F+GKEP K +NPDEAVAYGAAVQ  IL G+  ++T+D+LLLDVAPL+LGIET GGVMT LI
Sbjct:  222 GDTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLI 412

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 102/191 (53.40%), Postives = 131/191 (68.59%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+G+DF   LTRARFEEL  DLFR T+ PV+K + DA ++K  + EIVLVGGSTRIP++ +L+ D+F+GKEPNK +NPDEAVAYGAAVQ  IL+G+  ++T+D+LLLDV+PL+LGIET GGVMT LI
Sbjct:  222 GDTHLGGEDFDNRLVNHFVQEFKRKHKKDLSSNPRALRRLRTACERAKRTLSSAAQTTIEIDSLFEGVDFYTSLTRARFEELCQDLFRSTLEPVEKVLRDAKIDKAAVHEIVLVGGSTRIPRIVKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILTGDTSEKTQDLLLLDVSPLSLGIETAGGVMTPLI 412

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 104/191 (54.45%), Postives = 132/191 (69.11%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL +DLFR T+ PV+KA+ DA L+K QI ++VLVGGSTRIPKVQ+LL+D+F+G++ NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDVAPL+LG+ET GGVMT LI
Sbjct:  224 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALI 414

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 104/191 (54.45%), Postives = 132/191 (69.11%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL +DLFR T+ PV+KA+ DA L+K QI ++VLVGGSTRIPKVQ+LL+D+F+G++ NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDVAPL+LG+ET GGVMT LI
Sbjct:  224 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALI 414

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 104/191 (54.45%), Postives = 132/191 (69.11%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL +DLFR T+ PV+KA+ DA L+K QI ++VLVGGSTRIPKVQ+LL+D+F+G++ NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDVAPL+LG+ET GGVMT LI
Sbjct:  224 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALI 414

[Close]

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 104/191 (54.45%), Postives = 132/191 (69.11%), Query Frame = 3

Query:    3 GDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLI 575
            GDTHLGGEDFD R++ +F                RA+                  Q  +EI+SLF+GIDF   +TRARFEEL +DLFR T+ PV+KA+ DA L+K QI ++VLVGGSTRIPKVQ+LL+D+F+G++ NK +NPDEAVAYGAAVQ  IL G+  +  +D+LLLDVAPL+LG+ET GGVMT LI
Sbjct:  224 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALI 414

The following BLAST results are available for this feature:

BLAST of BQ623948 vs. ExPASy Swiss-Prot

BLAST of BQ623948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP72_SCHPO	3.887e-52	53.40	Probable heat shock protein ssa2 OS=Schizosaccharo...	[more]
HSP7D_DROME	5.076e-52	56.02	Heat shock 70 kDa protein cognate 4 OS=Drosophila ...	[more]
HSP76_SAGOE	6.630e-52	53.93	Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN...	[more]
HSP72_BOVIN	6.630e-52	54.45	Heat shock-related 70 kDa protein 2 OS=Bos taurus ...	[more]
HSP71_SCHPO	6.630e-52	53.40	Probable heat shock protein ssa1 OS=Schizosaccharo...	[more]
HSP71_PUCGR	6.630e-52	53.40	Heat shock protein HSS1 OS=Puccinia graminis GN=HS...	[more]
HSP71_PONAB	6.630e-52	54.45	Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP...	[more]
HSP71_HUMAN	6.630e-52	54.45	Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN...	[more]
HSP71_CANFA	6.630e-52	54.45	Heat shock 70 kDa protein 1 OS=Canis familiaris GN...	[more]
HS71B_PIG	6.630e-52	54.45	Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_01039 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01039 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623948 ID=BQ623948; Name=BQ623948; organism=Citrus sinensis; type=EST; length=575bp
ATGGAGACACTCATTTGGGAGGTGAGGACTTTGATCAGAGGGTTATGGAG
TACTTTATTAAATTGATCAAGAAGAAGCATGGAAAGGATATCAGCAAGGA
CAAAAGGGCTATTGGCAAGCTCAGGAGGGAAGCTGAACGTGCTAAGAGAG
CTCTCAGCAGCCAGCACCAGGTCCGTGTTGAAATTGAGTCACTTTTCGAT
GGCATTGACTTCTCCGAGCCACTTACTAGGGCTCGCTTTGAGGAGTTGAA
TAATGACTTGTTCAGAAAGACCATGGGACCTGTGAAGAAGGCCATGGAAG
ATGCTGGATTAGAGAAGAATCAGATTGATGAGATTGTTCTTGTTGGTGGT
AGTACTAGGATTCCCAAGGTTCAACAGCTTCTCAAAGACTATTTTGATGG
TAAAGAGCCTAACAAGGGTGTGAACCCAGATGAGGCAGTTGCTTATGGTG
CTGCTGTACAAGGTGGCATCTTGAGTGGTGAAGGTGGTGATGAAACCAAA
GATATCCTTCTCTTGGATGTGGCTCCACTCACCCTTGGTATCGAGACAGT
TGGTGGGGTGATGACCAAGTTGATC