BQ623962

Overview
NameBQ623962
Unique NameBQ623962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 60/204 (29.41%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   63 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQD 671
            K + AP+   + +    +A     G HK    +PL++ LR+ LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +TGG + G +  IK+ E    S E  +H+ +
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNE 207          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 56/201 (27.86%), Postives = 100/201 (49.75%), Query Frame = 3
Query:   48 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 647
            +  H KRL+ P  W +++    F  K  +GPH     +PL++VLR+ L YA   +E    L + +VL++GK  +D+  P G  D+++  +  E +R+     GR  L ++  + A+ KL K+ +      G   +  +DG T I   D    A D+I +  E+ ++    +++ G +V    G + G VG ++  +   GS
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 3
Query:   48 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 647
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+G   +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E   +    +++ G +V    G++ GR+G + + +   GS
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGS 200          
The following BLAST results are available for this feature:
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_PICTO1.909e-1829.4130S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_HALMA2.493e-1827.8630S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_HALLT2.493e-1827.8630S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01053 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01053 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623962 ID=BQ623962; Name=BQ623962; organism=Citrus sinensis; type=EST; length=709bp
AGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTG
AAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAA
GCTTGGTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAA
GGGAATGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCT
CTCACATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGT
TGATGGGAAGGTTAGGACAGATAAGACCTACCCTGCTGGTTTCATGGATG
TTGTGTCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACC
AAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAA
GCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACA
TCAACACCTATGATGGGCGTACCATCCGCTACCCTGACCCACTCATCAAA
GCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAGATCACTGACTT
CATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGGGGGTAGAAACA
GAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAGGGAAGTTTT
GAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTTGCAACTCGTCT
AGGCAATGT
back to top