BQ623962

Overview
NameBQ623962
Unique NameBQ623962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 320.087 bits (819), Expect = 7.350e-87
Identity = 154/224 (68.75%), Postives = 177/224 (79.02%), Query Frame = 3
Query:   36 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 707
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV  ILMQR V VDGKVRTD  YPAGFMDV+SI KT ENFRLL+D KGRF L  +  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E  KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D  GH+FATRL N
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSN 224          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 9.600e-87
Identity = 150/224 (66.96%), Postives = 182/224 (81.25%), Query Frame = 3
Query:   36 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 707
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL N
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTN 224          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 9.600e-87
Identity = 151/224 (67.41%), Postives = 180/224 (80.36%), Query Frame = 3
Query:   36 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 707
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +  +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISN 224          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 309.686 bits (792), Expect = 9.934e-84
Identity = 147/224 (65.62%), Postives = 177/224 (79.02%), Query Frame = 3
Query:   36 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 707
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISN 224          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.174e-82
Identity = 146/224 (65.18%), Postives = 176/224 (78.57%), Query Frame = 3
Query:   36 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 707
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V GKVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H +  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL   KI  FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL N
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSN 224          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.064e-77
Identity = 136/194 (70.10%), Postives = 160/194 (82.47%), Query Frame = 3
Query:   93 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 674
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.620e-76
Identity = 140/222 (63.06%), Postives = 167/222 (75.23%), Query Frame = 3
Query:   42 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 707
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VDGKVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++   KITD +KF+ GN+  VTGGRN GRVGII +RE+  G+ + IHI+D+ GH FATR+ N
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISN 223          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.540e-68
Identity = 132/225 (58.67%), Postives = 163/225 (72.44%), Query Frame = 3
Query:   39 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 707
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI +F   + GN+  +  G N GRVGII++ EKH+GSF+  H++DA G+ FATRLGN
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGN 225          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.313e-43
Identity = 92/219 (42.01%), Postives = 137/219 (62.56%), Query Frame = 3
Query:   36 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFA 692
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+G+VRT+  +P G  DVVSI KT E+FR+LY+   +F LH +  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+  E +K+ ++I      ++ V+ G+ RGRVG+I N    +G      + D  G+ F+
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFS 217          
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.999e-35
Identity = 83/216 (38.43%), Postives = 121/216 (56.02%), Query Frame = 3
Query:   51 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFAT 695
            +KHLKR  +P HW +      +  KPS GPH     LPL++++R+ LK A   RE   I+    VLVDG+ R +  +P GFMDVVSIP+T + +R+L D +GR  LH + +E A FKLCK+ +    + G   +N +DGR     D   +  D +KL + E +I + I F+  ++ +VTGGR+ G +G IK     + S   T  I+   G  F T
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLT 221          
The following BLAST results are available for this feature:
BLAST of BQ623962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_DICDI7.350e-8768.7540S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_DROME9.600e-8766.9640S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y1_PONPY9.600e-8767.4140S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4Y2_HUMAN9.934e-8465.6340S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL4.174e-8265.1840S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_HORSE1.064e-7770.1040S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_CAEEL2.620e-7663.0640S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH1.540e-6858.6740S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU1.313e-4342.0140S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METTH4.999e-3538.4330S ribosomal protein S4e OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01053 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01053 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623962 ID=BQ623962; Name=BQ623962; organism=Citrus sinensis; type=EST; length=709bp
AGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTG
AAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAA
GCTTGGTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAA
GGGAATGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCT
CTCACATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGT
TGATGGGAAGGTTAGGACAGATAAGACCTACCCTGCTGGTTTCATGGATG
TTGTGTCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACC
AAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAA
GCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACA
TCAACACCTATGATGGGCGTACCATCCGCTACCCTGACCCACTCATCAAA
GCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAGATCACTGACTT
CATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGGGGGTAGAAACA
GAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAGGGAAGTTTT
GAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTTGCAACTCGTCT
AGGCAATGT
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