BQ623963

Overview
NameBQ623963
Unique NameBQ623963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.377e-51
Identity = 96/148 (64.86%), Postives = 110/148 (74.32%), Query Frame = 2
Query:   77 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KAVAVL GT  V+G V+ +Q+ DGPTTV   ++GL PG HGFH+H  GDTTNGCMSTGPHFNP G  HG P DE RHA             A  T+VDNQIPLSGPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   69 KAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.647e-50
Identity = 98/173 (56.65%), Postives = 119/173 (68.79%), Query Frame = 2
Query:    2 PSFSLQALFIFLPPRGVLRSHSTMVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            P FS  A   F P    L   +   KAV+VL GT  V+G V+ +Q+ +GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   31 PQFSTLATSNFKP----LTVVAAAKKAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.957e-49
Identity = 93/148 (62.84%), Postives = 108/148 (72.97%), Query Frame = 2
Query:   77 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KAVAVL G   V+G V+ SQ+ DGPTTV+  ++GL PG HGFH+H  GDTTNGCMSTG HFNP    HG P DE RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   67 KAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.957e-49
Identity = 94/151 (62.25%), Postives = 108/151 (71.52%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 523
            ++KAVAV+ G   VKG++ F Q+  G T V G ++GL PG HGFH+HALGDTTNGC STGPHFNP  K+HG P D  RHA             A  +V D QIPLSG +SI+GRAVVVHAD DDLG+ GHELSKTTGNAG RV CGIIGLQ
Sbjct:    3 VIKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQ 153          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.474e-49
Identity = 92/148 (62.16%), Postives = 108/148 (72.97%), Query Frame = 2
Query:   77 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KAVAVL GT  V+G V+ +Q+  GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VD QIPLSGPNS++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   61 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 208          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.455e-49
Identity = 92/148 (62.16%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   77 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KAVAVL G   V+G V+ +QE + PTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VDNQIPL+GPNS+IGRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   52 KAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.763e-46
Identity = 88/137 (64.23%), Postives = 101/137 (73.72%), Query Frame = 2
Query:  110 VKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            V+G V+ SQE +GPTTV   L+GL PG HGFH+H  GDTTNGCMSTG HFNP    HG PED+ RHA             A  T+VDNQIPLSGP+S+IGRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 138          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 3.928e-46
Identity = 91/151 (60.26%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            +VKAV V+ G    KGTV F QEG+G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.928e-46
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 2
Query:   77 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KAVAVL GT  V G V+  QE DGPTTV+  ++GL PG HGFH+H  GDTTNGC+STG HFNP    HG P D  RHA             A  T+VD+QIPLSG NS++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   66 KAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 213          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.143e-45
Identity = 90/151 (59.60%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            +VKAV V+ G    KGTV F QE +G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                  + D++I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
The following BLAST results are available for this feature:
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODCP_PETHY2.377e-5164.86Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_PEA7.647e-5056.65Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLLC4.957e-4962.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC2_MESCR4.957e-4962.25Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODCP_ORYSJ6.474e-4962.16Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_MEDSA8.455e-4962.16Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_PINSY1.763e-4664.23Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC_DROVI3.928e-4660.26Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODCP_ZANAE3.928e-4661.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODC_DROWI1.143e-4559.60Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01054 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01054 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623963 ID=BQ623963; Name=BQ623963; organism=Citrus sinensis; type=EST; length=636bp
TCCCTCTTTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTG
TTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGA
ACTGAGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCC
AACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGAT
TCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGA
CCCCACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAA
TCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAA
GGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAG
CTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGACAAT
AATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGC
TTTGAGTGTGACTTTTCAAGACTATGATCTTGAATA
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