BQ623963

Overview
NameBQ623963
Unique NameBQ623963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.824e-43
Identity = 87/151 (57.62%), Postives = 102/151 (67.55%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.824e-43
Identity = 84/137 (61.31%), Postives = 94/137 (68.61%), Query Frame = 2
Query:  113 KGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KGTV F QE +  P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 6.933e-43
Identity = 87/151 (57.62%), Postives = 101/151 (66.89%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            +VKAV V+ G    KGTV F QE  + P  VSG + GL    HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.494e-42
Identity = 84/149 (56.38%), Postives = 103/149 (69.13%), Query Frame = 2
Query:   74 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            +KAV VL G+  VKGT++F Q+  G  TV+G +SGL PG HGFH+H  GD TNGC S+G HFNP  + HG PED+ RH              AT  + D  I L+G +SIIGRAVVVHA  DDLGKGGHE SKTTG+AGGR++CG+IG+
Sbjct:    3 IKAVCVLVGS--VKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.869e-42
Identity = 84/151 (55.63%), Postives = 96/151 (63.58%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            +VKAV V+ G   VKGTV F Q+    P  V+G ++GL  G HGFHVH  GD TNGC S GPHFNP G  HG P D NRH                  + D  I L G NSI+GR +VVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--VKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 79/148 (53.38%), Postives = 95/148 (64.19%), Query Frame = 2
Query:   77 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KAV VL G   V+G + F Q+ +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A  ++ D+ I LSG NSIIGR +VVH  PDDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 82/150 (54.67%), Postives = 100/150 (66.67%), Query Frame = 2
Query:   74 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PEDE RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 82/149 (55.03%), Postives = 92/149 (61.74%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 517
            MVKAV VL G+  VKG V F Q+ DG  TV G + GL  G HGFH+H  GD TNGC+S GPHFNP  K HG P+D +RH              A F   D QI L G  SIIGR  VVH   DDLGKGG + S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHV-GDLGNVTAEGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIG 148          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 81/149 (54.36%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   71 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 517
            MVKAV VL G+  VKG V F Q+ +G  +V G + GL  G HGFH+H  GD TNGCMS G HFNP  K HG P D +RH              A F + D+ I L GPNSIIGR  VVH   DDLGKGG++ S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHV-GDLGNVTAEGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148          
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.446e-40
Identity = 86/150 (57.33%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   77 KAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 520
            KAV VL G   V GTV F Q+ +  P  VSG + GL  G HGFHVH  GD TNGC S G HFNP  ++HG P    RH               T  ++ D+QI L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct:    4 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 151          
The following BLAST results are available for this feature:
BLAST of BQ623963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROTE1.824e-4357.62Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_DROBS1.824e-4361.31Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROER6.933e-4357.62Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_HALRO4.494e-4256.38Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_CERCA5.869e-4255.63Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_CAVPO6.489e-4153.38Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC_CALJA8.475e-4154.67Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC1_XENLA8.475e-4155.03Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC2_XENLA1.107e-4054.36Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_BOMMO1.446e-4057.33Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01054 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01054 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623963 ID=BQ623963; Name=BQ623963; organism=Citrus sinensis; type=EST; length=636bp
TCCCTCTTTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTG
TTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGA
ACTGAGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCC
AACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGAT
TCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGA
CCCCACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAA
TCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAA
GGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAG
CTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGACAAT
AATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGC
TTTGAGTGTGACTTTTCAAGACTATGATCTTGAATA
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