BQ623965

Overview
NameBQ623965
Unique NameBQ623965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_MOUSE (Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   64 MKITALLVL-KCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ +L VL K +P     V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y R + L  +   D  YP R +F+LL +VLDE+ K      W       +Q +  L++ L+KYQ+P EAD + K+Q ELDE
Sbjct:    1 MKLYSLSVLYKGDPKA---VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSGKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIQ-YTGLDDHLSKYQNPREADPMSKVQAELDE 148          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_HUMAN (Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.653e-21
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  118 VVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ ++Y  H Y RN  L  +   D+ YP R +F+LL +VLDE+ K      W       +  +P L+  L++YQ+P EAD + K+Q ELDE
Sbjct:   17 VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH-YPALDGHLSRYQNPREADPMTKVQAELDE 148          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6B_XENLA (Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=ykt6-B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ +L VL     G + V +L +A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDE
Sbjct:    1 MKLYSLSVLY---KGENKVHLLKSAYDVSSFSFFQRSSVQEFMTFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDE 148          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_XENTR (Synaptobrevin homolog YKT6 OS=Xenopus tropicalis GN=ykt6 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ +L VL     G + V +L +A DVS F +FQRSS++EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDE
Sbjct:    1 MKLYSLSVLY---KGDNKVSLLKSAYDVSSFSFFQRSSIQEFMAFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDE 148          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_RAT (Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN=Ykt6 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  118 VVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y R + L  +   D  YP R +F+LL +VLDE+ K      W       +  +  L+  L++YQ+P EAD + K+Q ELDE
Sbjct:   17 VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH-YTALDGHLSRYQNPREADPMSKVQAELDE 148          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6A_XENLA (Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=ykt6-A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ +L VL     G + V +L +A DVS F +FQRSS++EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDE
Sbjct:    1 MKLYSLSVLY---KGENKVHLLKSAYDVSSFSFFQRSSIQEFMAFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDE 148          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_DANRE (Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ +L VL  +   +   +L    D+S F +FQRSSV+EF+ F +  + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R  F+LL++VLDE+ +      W +     +Q +  L+  L +YQ+P EAD + K+Q ELDE
Sbjct:    1 MKLYSLSVL--HKGSTKANLLKATYDLSSFSFFQRSSVQEFMTFTSALIVERSALGSRASVKEQEYLCHVYVRNDNLGGVVIADSEYPSRVCFTLLDKVLDEFSRQVNSIDWPSGSPATIQ-YTALDSHLARYQNPREADAMTKVQAELDE 148          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_DICDI (Putative synaptobrevin homolog YKT6 OS=Dictyostelium discoideum GN=ykt6 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.162e-18
Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKV---HSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ ++ + K  P G+ PV+L    ++S FG+FQR SVKE  LFV+R    RT  G+R S++H + +     + +  GL      D  YP R + +L+   L+E+ K   ES WR  Q+D     P L++ L KYQ+P  AD ++ +Q+ LDE
Sbjct:    1 MKVYSIGLFKVVP-GNKPVLLNIVYELSSFGFFQRGSVKEVSLFVSRETVGRTNVGERVSMEHTQTQKVCHTTVDSKGLGCSVLTDSEYPGRVAHTLIRICLEEFYKVHPESEWRGLQSDVELQTPALDQLLLKYQNPETADPMMNLQKNLDE 152          
The following BLAST results are available for this feature:
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
YKT6_MOUSE2.089e-2141.45Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6... [more]
YKT6_HUMAN4.653e-2141.35Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6... [more]
YKT6B_XENLA6.719e-2039.47Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=... [more]
YKT6_XENTR8.776e-2038.82Synaptobrevin homolog YKT6 OS=Xenopus tropicalis G... [more]
YKT6_RAT8.776e-2040.60Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN... [more]
YKT6A_XENLA8.776e-2038.82Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=... [more]
YKT6_DANRE5.688e-1937.75Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 ... [more]
YKT6_DICDI2.162e-1837.25Putative synaptobrevin homolog YKT6 OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01056 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01056 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623965 ID=BQ623965; Name=BQ623965; organism=Citrus sinensis; type=EST; length=511bp
CTTTTCAAAAAACCAAACGACGCCGAATCAGACGAACCGAACAACTTTCA
CAGCAGGAGGAGGATGAAGATCACGGCGTTACTGGTTTTGAAGTGCAACC
CGGACGGATCGGATCCGGTTGTGTTAGCGACCGCCATGGACGTTAGCCAT
TTCGGTTACTTTCAACGATCCAGCGTTAAGGAGTTCATCCTCTTCGTCGC
TCGCACTGTCGGTAAACGGACTCCGCCCGGCCAGCGCCAGTCCGTCCAAC
ACGAAGAGTACAAGGTGCATTCTTATAACAGGAATGGACTTTGCGCAATG
GGATTCATGGATGATCATTATCCAGTGCGAAGCTCATTCTCTCTTCTCAA
CCAGGTGCTAGATGAGTATCAGAAAAATTTTGGTGAATCATGGAGGACTG
CACAGGCAGACAACATGCAACCGTGGCCTTATCTAAATGAAGCTTTGAAC
AAATATCAGGACCCAGCGGAGGCTGATAAGCTGTTGAAAATTCAGAGGGA
ATTGGATGAAA
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