BQ623975

Overview
NameBQ623975
Unique NameBQ623975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 67/159 (42.14%), Postives = 89/159 (55.97%), Query Frame = 3
Query:   48 KVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 446
            +V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+          +R R                     GYRGR  Y  PY
Sbjct:   67 EVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  111 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 422
            K EAD RSV+VGNVDY  + EE++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  111 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497
            +EE DSRSV+VGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR            G+  G RG +G+
Sbjct:   95 QEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGRG-----------GIRGGIRGGRGR 215          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  117 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 374
            EAD RSV+VGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A++L+ES   GR +KVLPKRTN PG+
Sbjct:  135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   99 NQASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 374
            ++ SKE  EAD RSVFVGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KVLPKRTN PG+
Sbjct:  131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  105 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY 446
            A + EADSRS+FVGN+    TPE+++ HF+ CG + R+T+L D+  G PKG+ Y+EF      ++ALQLN  EL G+++ V  KRTN+PG  +        ++  ++N P M Y      PY PPY
Sbjct:   56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPY 181          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query:   75 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM--------KQYRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497
            +  A V   +  ++  D++SVF+GNVD+  T EEV++HF+ CG + R TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM        +    R      G  GR+  V   +    G   G RG +G+
Sbjct:   43 ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFGRGRGAARGAPGRQQTVVVKYVYVNGPNRGGRGGRGR 192          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:   75 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM--------KQYRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497
            +  A V   +  ++  D++SVF+GNVD+  T EE+++HF+ CG + + TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM        +    R      G  GR+  V   +    G   G RG +G+
Sbjct:   37 ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFGRGRGAARGAPGRQQTVVVKYVYVNGPNRGGRGGRGR 186          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  123 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 347
            D RSVFVGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   D+V  AL+LN SEL GR+L+V+
Sbjct:  285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: RBM34_RAT (RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   87 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 380
            ++A+  AS+   D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   DAV  AL+LN SEL GR+L+V+ +  N   +KQ
Sbjct:  274 DLASETASR---DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 368          
The following BLAST results are available for this feature:
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PABP2_DROPS1.753e-2442.14Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
EPAB2_HUMAN2.531e-2353.33Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
PABP2_DICDI1.641e-2246.97Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
EPAB2_RAT8.143e-2257.47Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
EPAB2_MOUSE1.814e-2155.79Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST7.622e-2042.06RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]
YQOC_CAEEL3.540e-1735.33Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL7.887e-1734.00Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
RBM34_HUMAN5.849e-1248.68RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]
RBM34_RAT4.952e-1141.41RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01066 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623975 ID=BQ623975; Name=BQ623975; organism=Citrus sinensis; type=EST; length=703bp
TGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGATGCAAGCTAAG
GTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTGGCTGCTAA
TCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTTTGTTGGCAATG
TAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCCAATCCTGT
GGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGCCAGCCAAA
GGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCAAGAGGCTC
TCCAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGGTTTTACCT
AAGAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCAAGGCGTTTCAA
TCCTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACCTCCTTATTTCT
ATTCACCTTATGGATTGGGGGAAGGTTCCCGAGGTTCAAAAGGCCAATGA
GGTACATGCCCTACTACTAGCAGATTGTGCTCCTGTTGAAGATGGTGACA
TTTGTGGATCATCCATAAACTGAAAAATTCAATGTATCATGGTGCTTATG
TATCCTGCTTTAGATAGGAAACAAAGGATTTATTAGCTACATGTTTATTA
TTGATGTCTTGAATGATCAAACATTATTAGCATGAACTTTATGGAATTTC
TTG
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