BQ623975
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24 Identity = 67/159 (42.14%), Postives = 89/159 (55.97%), Query Frame = 3 Query: 48 KVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 446 +V+K+M G+ A V + K+E D+RSV+VGNVDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NE+ GRQ+KV+ KRTN PG+ +R R GYRGR Y PY Sbjct: 67 EVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23 Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 3 Query: 111 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 422 K EAD RSV+VGNVDY + EE++ HF CG V+RVTIL DKF G PKG+AY+EF +VQ A++L++S GR +KVLPKRTN PG+ + G RG Sbjct: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22 Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3 Query: 111 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497 +EE DSRSV+VGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEF+ +++ A+ LN+S + RQLK+ PKRTN+P M+Q P + G RGR G+ G RG +G+ Sbjct: 95 QEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGRG-----------GIRGGIRGGRGR 215
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22 Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 3 Query: 117 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 374 EAD RSV+VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +VQ A++L+ES GR +KVLPKRTN PG+ Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21 Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 3 Query: 99 NQASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 374 ++ SKE EAD RSVFVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +V+ A+ L+ES GR +KVLPKRTN PG+ Sbjct: 131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20 Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 105 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY 446 A + EADSRS+FVGN+ TPE+++ HF+ CG + R+T+L D+ G PKG+ Y+EF ++ALQLN EL G+++ V KRTN+PG + ++ ++N P M Y PY PPY Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPY 181
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17 Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 75 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM--------KQYRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497 + A V + ++ D++SVF+GNVD+ T EEV++HF+ CG + R TI DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM + R G GR+ V + G G RG +G+ Sbjct: 43 ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFGRGRGAARGAPGRQQTVVVKYVYVNGPNRGGRGGRGR 192
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17 Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 75 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM--------KQYRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497 + A V + ++ D++SVF+GNVD+ T EE+++HF+ CG + + TI DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM + R G GR+ V + G G RG +G+ Sbjct: 37 ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFGRGRGAARGAPGRQQTVVVKYVYVNGPNRGGRGGRGR 186
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3 Query: 123 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 347 D RSVFVGN+ Y +++HF CG++ V I+ DK G KGF YV F D+V AL+LN SEL GR+L+V+ Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: RBM34_RAT (RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11 Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 3 Query: 87 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 380 ++A+ AS+ D RSVFVGN+ Y +++HF CG++ V I+ + G +GF YV F DAV AL+LN SEL GR+L+V+ + N +KQ Sbjct: 274 DLASETASR---DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 368 The following BLAST results are available for this feature:
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623975 ID=BQ623975; Name=BQ623975; organism=Citrus sinensis; type=EST; length=703bpback to top |