BQ623975

Overview
NameBQ623975
Unique NameBQ623975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: RBM34_MOUSE (RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 3 
Query:   87 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 380
            ++A+  AS+   D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   DAV  AL+LN SEL GR+L+V+ +  N   +KQ
Sbjct:  280 DLASETASR---DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 374
The following BLAST results are available for this feature:
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RBM34_MOUSE4.952e-1141.41RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01066 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623975 ID=BQ623975; Name=BQ623975; organism=Citrus sinensis; type=EST; length=703bp
TGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGATGCAAGCTAAG
GTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTGGCTGCTAA
TCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTTTGTTGGCAATG
TAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCCAATCCTGT
GGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGCCAGCCAAA
GGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCAAGAGGCTC
TCCAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGGTTTTACCT
AAGAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCAAGGCGTTTCAA
TCCTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACCTCCTTATTTCT
ATTCACCTTATGGATTGGGGGAAGGTTCCCGAGGTTCAAAAGGCCAATGA
GGTACATGCCCTACTACTAGCAGATTGTGCTCCTGTTGAAGATGGTGACA
TTTGTGGATCATCCATAAACTGAAAAATTCAATGTATCATGGTGCTTATG
TATCCTGCTTTAGATAGGAAACAAAGGATTTATTAGCTACATGTTTATTA
TTGATGTCTTGAATGATCAAACATTATTAGCATGAACTTTATGGAATTTC
TTG
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