BQ623976

Overview
NameBQ623976
Unique NameBQ623976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 71/200 (35.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y G                     D ++  + K+KE+KNGRLAM +
Sbjct:   23 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR----VGGGPLGE----GLDKIYPG-----------GAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 195          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 69/199 (34.67%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R         +   Y  G    LG                     D ++  + K+KE+KNGRLAM +
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLG------------------LADDPEAFAELKVKEIKNGRLAMFS 222          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 71/200 (35.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y G                     D ++  + K+KE+KNGRLAM +
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----VGGGPLGE----GLDKIYPG-----------GAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 67/199 (33.67%), Postives = 90/199 (45.23%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DRP +    S Q  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G                +                D  +  + K+KE+KNGRLAM +
Sbjct:   51 GPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR----VGGGPLGE--------------GLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFS 223          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 65/196 (33.16%), Postives = 90/196 (45.92%), Query Frame = 1
Query:  145 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYF---LGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLASWVTLFK 681
            +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A        P+   TL   ++ LMG+ E +R+ D          WA P S   + F    G + Y G                     D   ++  KL E+K+ RLAMLA  +  F+
Sbjct:   75 WLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGIF----VGQAW-----TGIPWFEAGADPGA------VAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGG-KFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 74/233 (31.76%), Postives = 107/233 (45.92%), Query Frame = 1
Query:   19 DQLNPQLGHQEKVPLLLGQPSTPP---VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQ----YFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            ++L+ ++G  E    ++   S  P   +  G+DRPL+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G      Y  G    LG                     D ++  + K+KE+KNGRLAM +
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEA--VWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGEVEDPIYPGGSFDPLG------------------LADDPEAFAELKVKELKNGRLAMFS 223          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 61/193 (31.61%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  145 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYFLGFEKYLGRIPA--IRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLASWVTLFK 681
            +LDGSLPGDYGFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D          WA P S   + F  F    G                       D + ++  K+ E+K+ RLAMLA  +  F+
Sbjct:   70 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGIF----VGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 65/199 (32.66%), Postives = 92/199 (46.23%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DR  +    S Q+ SYL+G  PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G I PE+L K   +  +  + WF+ G  I   G  +Y  +P  +           ++ LMG  E  R       G  G   + G + +                       D  +  + K+KE+KNGRLAM +
Sbjct:   49 GPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE-GNDLYPGGQYF----------------DPLGLADDPTTFAELKVKEIKNGRLAMFS 223          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 58/182 (31.87%), Postives = 79/182 (43.41%), Query Frame = 1
Query:  118 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            W   +   SYLDGS PGD+GFD LGL + P     + E       E+I+ R+AML   G I PE LG    +  +   A    G     G    W    T+  +E   + F EH+R  +     S  ++Y  G    LG                    KD    ++ K+KE+KNGRLA+LA
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAA-IPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME---KDSEKKKYPGGAFDPLG------------------YSKDPAKFEELKVKEIKNGRLALLA 202          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 65/185 (35.14%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  145 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTL---FVLEMALMGFAEHRR------FQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            YL+G + GDYG+DP GL   PE        K+ A+ E+I+ R+AMLGA G I PE L K G      A+ WF+TG +   G T NY+    P  L    V E+ L+G AE+ R      F+D  +PG                                   KD +     K+KE+KNGRLAM A
Sbjct:   84 YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGG--------------------------PFDPLGLAKDPEQGALLKVKEIKNGRLAMFA 235          
The following BLAST results are available for this feature:
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CB25_SOLLC2.058e-1435.50Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI2.058e-1434.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC2.688e-1435.50Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_GOSHI3.882e-1333.67Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB4_SPIOL5.070e-1333.16Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB23_POLMU8.648e-1331.76Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB4A_SOLLC1.129e-1231.61Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB23_SOLLC2.516e-1232.66Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB11_SOLLC2.516e-1231.87Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB26_ARATH3.286e-1235.14Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623976 ID=BQ623976; Name=BQ623976; organism=Citrus sinensis; type=EST; length=685bp
GACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGA
AAAGGTTCCTTTGTTGTTAGGGCAGCCTTCTACTCCTCCTGTTAAGCAAG
GAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTG
GATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGA
CCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCG
AGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCA
CCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGC
CTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGG
CAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCC
GAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCA
ATACTTCCTCGGATTCGAGAAATACTTGGGGAGGATCCCGGCGATCCGGC
TTACCCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAG
AAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGC
AATGTTGGCATCTTGGGTTACTTTGTTCAAGGGCT
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