BQ623976

Overview
NameBQ623976
Unique NameBQ623976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 61/194 (31.44%), Postives = 91/194 (46.91%), Query Frame = 1
Query:  145 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGF---EKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLASWVTLFK 681
            +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+           DWA P S   + F  F   + Y G                     D + ++  KL E+K+ RLAMLA  +  F+
Sbjct:   70 WLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGG-KFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 66/200 (33.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DR  +    S Q+ SYL+G  PGDYG+D  GLS DPE    F   + L   EVI+GR+AMLGA+G + PE+L K  G+  +E    WF+ G  I   G  +Y  +P  +           ++ LMG  E  R       G  G   + G + +                       D  +  + K+KE+KNGRLAM +
Sbjct:   52 GPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGE-GNDLYPGGQYF----------------DPLGLADDPVTFAELKVKEIKNGRLAMFS 226          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 64/199 (32.16%), Postives = 91/199 (45.73%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G+DR  +    S +  SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R    A  G +G    L +                          D ++  + K+KE+KNGRLAM +
Sbjct:   51 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGEGPLGEAEDLLY--------------PGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFS 224          
The following BLAST results are available for this feature:
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CB4B_SOLLC4.292e-1231.44Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB23_HORVU5.606e-1233.00Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SINAL4.745e-1132.16Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623976 ID=BQ623976; Name=BQ623976; organism=Citrus sinensis; type=EST; length=685bp
GACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGA
AAAGGTTCCTTTGTTGTTAGGGCAGCCTTCTACTCCTCCTGTTAAGCAAG
GAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTG
GATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGA
CCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCG
AGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCA
CCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGC
CTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGG
CAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCC
GAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCA
ATACTTCCTCGGATTCGAGAAATACTTGGGGAGGATCCCGGCGATCCGGC
TTACCCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAG
AAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGC
AATGTTGGCATCTTGGGTTACTTTGTTCAAGGGCT
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