BQ623977

Overview
NameBQ623977
Unique NameBQ623977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA2_ARATH (Phospholipase D alpha 2 OS=Arabidopsis thaliana GN=PLDALPHA2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.701e-24
Identity = 64/160 (40.00%), Postives = 83/160 (51.88%), Query Frame = 2
Query:    2 DDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DDFH P +    I    PREPWHD+HCRL+GP A+DVL NFEQRW +                   D L+K+  +             G  I+P       V   +D + W+VQ+FRSID G+  GFP S E   +  L+  KD +ID+SIQ AYI A+R
Sbjct:  383 DDFHQPNFTGAAITKGGPREPWHDIHCRLEGPIAWDVLYNFEQRWSR---------------QGGKDILVKMREL-------------GDIIIPPSP----VLFSEDHDVWNVQLFRSIDGGAAAGFPDSPEAAAEAGLVSGKDNIIDRSIQDAYIHAIR 510          
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA1_ORYSJ (Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica GN=PLD1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.701e-24
Identity = 65/160 (40.62%), Postives = 84/160 (52.50%), Query Frame = 2
Query:    2 DDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DDFH P +    I    PREPWHD+H RL+GP A+DVL NFEQRWRK                   D L+++  +S              TI+P       V   +D E W+VQ+FRSID G+  GFP + E+     L+  KD +ID+SIQ AYI A+R
Sbjct:  386 DDFHQPNFATASIKKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWRK---------------QGGKDLLLQLRDLS-------------DTIIPPSP----VMFPEDRETWNVQLFRSIDGGAAFGFPDTPEEAAKAGLVSGKDQIIDRSIQDAYIHAIR 513          
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA1_BRAOC (Phospholipase D alpha 1 OS=Brassica oleracea var. capitata GN=PLD1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.222e-24
Identity = 65/160 (40.62%), Postives = 85/160 (53.12%), Query Frame = 2
Query:    2 DDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DDFH P +    I    PREPWHD+H RL+GP A+DVL NFEQRW K                   D L+K+  +S I+            I P       V  ++D + W+VQ+FRSID G+  GFP+S E   +  L+  KD +ID+SIQ AYI A+R
Sbjct:  384 DDFHQPNFTGAAITKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWSK---------------QGGKDILVKLRELSDII------------ITPSP-----VMFQEDHDVWNVQLFRSIDGGAAAGFPESPEAAAEAGLVSGKDNIIDRSIQDAYIHAIR 511          
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA1_MAIZE (Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.902e-24
Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 2
Query:    2 DDFHNPTYPIGT---KAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DDFH P +  G+     PREPWHD+H RL+GP A+DVL NFEQRWRK                   D L+++  +  I+ P                    V   +D E W+VQ+FRSID G+  GFP++ E+     L+  KD +ID+SIQ AY+ A+R
Sbjct:  386 DDFHQPNFEGGSIKKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWRK---------------QGGKDLLVRLRDLPDIIIPPSP-----------------VMFPEDRETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDQIIDRSIQDAYVNAIR 513          
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA1_ARATH (Phospholipase D alpha 1 OS=Arabidopsis thaliana GN=PLDALPHA1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 64/160 (40.00%), Postives = 85/160 (53.12%), Query Frame = 2
Query:    2 DDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DDFH P +    I    PREPWHD+H RL+GP A+DV+ NFEQRW K                   D L+K+  +S I+            I P       V  ++D + W+VQ+FRSID G+  GFP+S E   +  L+  KD +ID+SIQ AYI A+R
Sbjct:  384 DDFHQPNFTGAAITKGGPREPWHDIHSRLEGPIAWDVMYNFEQRWSK---------------QGGKDILVKLRDLSDII------------ITPSP-----VMFQEDHDVWNVQLFRSIDGGAAAGFPESPEAAAEAGLVSGKDNIIDRSIQDAYIHAIR 511          
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA2_BRAOC (Phospholipase D alpha 2 OS=Brassica oleracea var. capitata GN=PLD2 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.209e-23
Identity = 65/160 (40.62%), Postives = 83/160 (51.88%), Query Frame = 2
Query:    2 DDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DDFH P +    I    PREPW D+H RL+GP A+DVL NFEQRW K                   D L+K+  +S I+            I P       V  ++D + W+VQ+FRSID G+  GFP S E   +  L+  KD VID+SIQ AYI A+R
Sbjct:  386 DDFHQPNFTGASITKGGPREPWQDIHSRLEGPIAWDVLYNFEQRWSK---------------QGGKDILVKLRELSDII------------ITPSP-----VMFQEDHDVWNVQLFRSIDGGAAAGFPDSPEVAAEAGLVSGKDNVIDRSIQDAYIHAIR 513          
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA1_PIMBR (Phospholipase D alpha 1 OS=Pimpinella brachycarpa GN=PLD1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 60/160 (37.50%), Postives = 81/160 (50.62%), Query Frame = 2
Query:    2 DDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DDFH P +    I    PREPWHD+H RL+GP A+DVL NFEQRWRK                   D L+ +  +  ++ P                    V+  DD E W+VQ+FRSID G+   FP++ E+     L+  K+ +I +SIQ AYI A+R
Sbjct:  382 DDFHQPNFEGAAITKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWRK---------------QGGKDILLNLRELQDVIIPPSP-----------------VTFPDDDETWNVQLFRSIDEGAAFFFPQTPEEAAKAGLVSGKENIIVRSIQDAYIHAIR 509          
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Match: PLDA2_ORYSJ (Phospholipase D alpha 2 OS=Oryza sativa subsp. japonica GN=PLD2 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 7.904e-22
Identity = 62/159 (38.99%), Postives = 77/159 (48.43%), Query Frame = 2
Query:    5 DFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAVR 472
            DFH P      +    PREPWHD+H +++GPAA+DVL NFEQRWRK     +L                            L LK     I+P       V   DD E W VQ+FRSID G+  GFP + E      L+  K+  ID+SIQ AYI A+R
Sbjct:  391 DFHQPNLDGAAVTKGGPREPWHDIHSKIEGPAAWDVLYNFEQRWRKQGGDKDLL---------------------------LDLKAMADLIIPPSP----VMFPDDGEAWSVQLFRSIDGGACFGFPSTPEAAARSGLVSGKNNTIDRSIQDAYIHAIR 518          
The following BLAST results are available for this feature:
BLAST of BQ623977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PLDA2_ARATH1.701e-2440.00Phospholipase D alpha 2 OS=Arabidopsis thaliana GN... [more]
PLDA1_ORYSJ1.701e-2440.63Phospholipase D alpha 1 OS=Oryza sativa subsp. jap... [more]
PLDA1_BRAOC2.222e-2440.63Phospholipase D alpha 1 OS=Brassica oleracea var. ... [more]
PLDA1_MAIZE2.902e-2438.75Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 S... [more]
PLDA1_ARATH6.466e-2440.00Phospholipase D alpha 1 OS=Arabidopsis thaliana GN... [more]
PLDA2_BRAOC3.209e-2340.63Phospholipase D alpha 2 OS=Brassica oleracea var. ... [more]
PLDA1_PIMBR1.593e-2237.50Phospholipase D alpha 1 OS=Pimpinella brachycarpa ... [more]
PLDA2_ORYSJ7.904e-2238.99Phospholipase D alpha 2 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01068 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01068 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623977 ID=BQ623977; Name=BQ623977; organism=Citrus sinensis; type=EST; length=477bp
GGATGATTTTCATAATCCTACATATCCTATTGGAACCAAGGCTCCAAGGG
AACCATGGCATGATTTGCATTGCAGATTAGATGGGCCTGCTGCATATGAT
GTTCTTATCAACTTTGAGCAGCGTTGGAGAAAAGCAACCAAGTTGACAGA
GTTAACTTTCAAGTTCAAAAGGGTCTCTCATTGGCGTGATGATTATCTGA
TTAAGATAGGGCGCATCTCGTGGATACTAAGTCCTGAGCTATCTCTTAAA
ACGAATGGAACAACAATAGTTCCAAGGGATGATAATGTAGTACGTGTTTC
AAAGGAGGATGATCCTGAAAACTGGCATGTTCAGATTTTCCGGTCCATAG
ACTCAGGATCAGTGAAAGGATTTCCAAAATCTATTGAGGACATTGATGAC
CAGAGCCTTATCTGTGCAAAAGATGTGGTGATAGATAAGAGCATTCAAAC
CGCTTATATCCAAGCAGTCAGATCTGC
back to top