BQ623989

Overview
NameBQ623989
Unique NameBQ623989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 200
            CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   56 CCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   54 PGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   50 PGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.158e-20
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 200
            CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   56 CCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.960e-19
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINAN--VAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CC GVRSL   A+TT DRQ+ CNCLKQA   IP  NAN  +AAGLP +CGV+IPYKISP+TDC  ++
Sbjct:   55 PSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.343e-19
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:   49 PACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   50 CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GVR+LN AA TTPDRQAACNCLK A  SI  +NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:   51 CCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   43 PQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 200
            CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   54 CCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP_MAIZE3.949e-2068.75Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_GOSHI3.949e-2062.69Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI3.949e-2062.69Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_DAUCA5.158e-2065.63Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP3_PRUDU1.960e-1963.77Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP_PYRCO3.343e-1956.72Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_TOBAC9.727e-1964.62Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_CICAR1.270e-1866.15Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP4_LENCU1.659e-1862.69Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP2_ORYSI1.659e-1865.63Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623989 ID=BQ623989; Name=BQ623989; organism=Citrus sinensis; type=EST; length=366bp
CACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACC
ACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATC
AATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTG
GAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTC
AGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAG
AAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAG
TCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTT
TAATATCATATTAAAT
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