BQ623989

Overview
NameBQ623989
Unique NameBQ623989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            PPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   49 PPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   53 CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GV++L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   50 CCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   53 CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   50 CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GV+ L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   50 CCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.971e-17
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GV  LN  ARTTPDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:   53 CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CC GV+ LNGAARTT DR+AACNCLK +  SI G+     A LP +CGV +PY IS +T+C+ +R
Sbjct:   51 PQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CC GV+ L G A+TT DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   50 CCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P  C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   54 PNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
The following BLAST results are available for this feature:
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP4_ARATH1.835e-1756.72Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP3_BRANA1.835e-1761.54Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_SOLLC1.835e-1760.00Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_BRANA1.835e-1761.54Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP2_TOBAC2.396e-1760.00Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SOLPN2.396e-1760.00Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTPA_BRAOT6.971e-1757.58Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_LENCU1.553e-1656.72Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP2_SOLPN2.028e-1658.46Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP6_GOSHI3.460e-1659.70Non-specific lipid-transfer protein 6 OS=Gossypium... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623989 ID=BQ623989; Name=BQ623989; organism=Citrus sinensis; type=EST; length=366bp
CACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACC
ACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATC
AATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTG
GAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTC
AGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAG
AAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAG
TCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTT
TAATATCATATTAAAT
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