BQ623999

Overview
NameBQ623999
Unique NameBQ623999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.507e-77
Identity = 136/192 (70.83%), Postives = 173/192 (90.10%), Query Frame = 1
Query:   19 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTS 594
            M  R D EY YLFK+VLIGDSGVGKSN+LSRFTRN F L+SKSTIGVEFAT++LQ+EG+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  +F+NV RWL+ELRDHADS+IVIMM+GNK+DL HLRAV+ ++ ++ AE+EGL F+ETSA+EA+NVE+AFQTI++E+Y I+++K+L++ E A +++
Sbjct:    1 MGGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASA 192          

HSP 2 Score: 24.2534 bits (51), Expect = 2.507e-77
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  597 EGQTIVVGGASEANTKKPCCSS 662
            +G+TI +  A+  NTK+ CCS+
Sbjct:  197 QGKTISIDSAA-GNTKRACCSA 217          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 3.579e-77
Identity = 138/187 (73.80%), Postives = 168/187 (89.84%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPS 588
            R +++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR+LQV+G+ +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ +TFENV RWLKELRDH D NIV+M++GNK+DL+HL AV T++ +++AERE L F+ETSALE+ NVE AF  +L++IYRI+SK+S+ +G+ A S
Sbjct:    6 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGS 192          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.610e-76
Identity = 138/188 (73.40%), Postives = 165/188 (87.77%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPST 591
            R D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+TL V+ + +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFEN +RWLKELRDH D NIV+M+IGNK+DL+HL AV TED +S+AERE L F+ETSALEA NVE AF  +L++IYRI+SK+++ +G+   S+
Sbjct:    5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSS 192          

HSP 2 Score: 20.7866 bits (42), Expect = 1.610e-76
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 3
Query:  573 GASSFNIKEGQTIVVGGASEANTKKPCCSS 662
            G+SS    +GQTI V   S    +  CCS+
Sbjct:  189 GSSSGLPSKGQTINVKEDSSVLKRFGCCST 218          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.099e-76
Identity = 138/189 (73.02%), Postives = 167/189 (88.36%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTS 594
            + D+EYDYLFK+VLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFAT++L ++G+ IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ TTFE   RWLKELRDH D NIV+M+IGNK+DL+HL  V+TED +++AE+E L F+ETSALEA NVE AF  +L++IYRI+SK+++ +G+  PSTS
Sbjct:    5 KADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGD-RPSTS 192          

HSP 2 Score: 21.1718 bits (43), Expect = 2.099e-76
Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 3
Query:  570 RGASSFNIKEGQTIVVGGASEANTKKPCCSS 662
            R ++S    +GQTI V   S    +  CCS+
Sbjct:  188 RPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.320e-76
Identity = 139/191 (72.77%), Postives = 166/191 (86.91%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTSKK 600
            R +++YDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATRTL+V+G+ +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKEL++H D NIV+M++GNK+DL+HL AV TED +SYAE+E L F+ETSALEA NVE AF  +L++IYRI SKK + +GE   ++  K
Sbjct:    5 RVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPK 195          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 6.075e-76
Identity = 137/189 (72.49%), Postives = 167/189 (88.36%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTS 594
            R D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT++L ++ + IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  T+ENV+RWLKELRDH D NIV+M+IGNK+DL+HL AV+T++A+  AEREGL F+ETSALEA NVE AF   L++IYRI+SKK++ +G+   ++S
Sbjct:    5 RADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSS 193          

HSP 2 Score: 21.1718 bits (43), Expect = 6.075e-76
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query:  573 GASSFNIKEGQTIVVGGASEANTKKPCCSS 662
            GA+S    +G+TI +     +  K  CCSS
Sbjct:  189 GATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.350e-75
Identity = 134/181 (74.03%), Postives = 164/181 (90.61%), Query Frame = 1
Query:   34 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            ++EYDYLFK VLIGDSGVGKSNLL RFTRNEF +ESKSTIGVEFATR + ++ + IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD+TK ++F+NV RWLKELR+HADSNIVIM++GNKTDL HLRAV+TE+AQ++A    LSFIETSA++A NVE+AFQT+L+EI+RI+S +SL +G+
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGD 184          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.350e-75
Identity = 140/195 (71.79%), Postives = 169/195 (86.67%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL-SSGEPAPSTSKKDRL 609
            R D+EYDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+L V+ + IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ +TFENV  WLKELR+H D NIV+M++GNK+DL+HL AV TEDA+S+AE+E L F+ETSALEA NVE AF  +L++I+ I+SKK++ ++ E A   SK D++
Sbjct:    5 RADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKI 199          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 9.746e-75
Identity = 132/190 (69.47%), Postives = 166/190 (87.37%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTSK 597
            R +++YDYLFK+VLIGDSGVGKSNLLSRF+RNEF LESKSTIGVEFATR+++V+ + +KAQIWDTAGQERYRAITSAYYRGA+GAL+VYD+T+  TFENV RWLKELRDH D NIVIM++GNK DL+HLRAV+TEDA+++AERE   F+ETSALE++NVE AF  +L+EIY+++ +K+L  G+   +  K
Sbjct:    6 RAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPK 195          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.317e-74
Identity = 133/182 (73.08%), Postives = 161/182 (88.46%), Query Frame = 1
Query:   28 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG 573
            R DEEYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+T +VEG+ +KAQIWDTAGQERYRAITSAYYRGA+GALL+YDVT+  TFEN +RWL+ELR H D NIV+M+IGNK DL+HL AV TE+A+++AERE L F+ETSAL+A NVE AF  +L++I++I+SK+S+  G
Sbjct:    5 RADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGG 186          
The following BLAST results are available for this feature:
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP2_ORYSJ2.507e-7770.83Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RIC2_ORYSJ3.579e-7773.80Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11D_LOTJA1.610e-7673.40Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA2.099e-7673.02Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH2.320e-7672.77Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPT3_NICPL6.075e-7672.49Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
YPT3_SCHPO3.350e-7574.03GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1C_ARATH3.350e-7571.79Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11B_TOBAC9.746e-7569.47Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1A_ARATH6.317e-7473.08Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01090 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01090 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623999 ID=BQ623999; Name=BQ623999; organism=Citrus sinensis; type=EST; length=664bp
ATATATATATAAATATAAATGGCGAGGAGACCGGACGAGGAATACGATTA
CTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGGAAGTCGAACT
TACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACT
ATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAAT
AAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAA
CCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTACGATGTG
ACAAAACCAACAACATTTGAAAACGTGAGCCGGTGGCTGAAGGAGCTGAG
GGACCACGCAGACTCCAACATCGTGATCATGATGATTGGAAATAAGACTG
ATCTGAAACACCTCCGAGCTGTTGCAACAGAGGACGCCCAAAGCTATGCT
GAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAA
TGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCA
GCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAACATCAAAGAAG
GACAGACTATTGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCT
TGTTGCTCTTCATC
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