BQ623999

Overview
NameBQ623999
Unique NameBQ623999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.267e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.267e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.267e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.267e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.267e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.573e-46
Identity = 90/179 (50.28%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R +TS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 7.278e-46
Identity = 92/181 (50.83%), Postives = 131/181 (72.38%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI-YRIISKKSLSSGEP 579
            EYDYLFK++LIGDSGVGKS LL RF+ + +     STIGV+F  RT++ +G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   RA+  E A+++A+  G+ F+ETSA +A NVE+AF  + + I  R+ S+ + ++  P
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARP 184          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.278e-46
Identity = 90/171 (52.63%), Postives = 122/171 (71.35%), Query Frame = 1
Query:   43 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 555
            Y YLFK ++IGD+GVGKS LL +FT   F      T+GVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.505e-46
Identity = 90/184 (48.91%), Postives = 130/184 (70.65%), Query Frame = 1
Query:   40 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPST 591
            EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  RT++ +G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYD T+  +F NV +WL E+  +A+ ++  ++IGNK D+   + V+TE  ++ A+  G+ F+ETSA ++INVE+AF TI  EI + +  ++ ++    P T
Sbjct:    4 EYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGT 187          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.505e-46
Identity = 93/194 (47.94%), Postives = 133/194 (68.56%), Query Frame = 1
Query:   43 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAP-----STSKK 600
            YDYLFK++LIGDSGVGK+ LL RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S SSG   P     S SKK
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRSKK 198          
The following BLAST results are available for this feature:
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_PONAB3.267e-4650.84Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN3.267e-4650.84Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN3.267e-4650.84Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_MOUSE4.267e-4650.84Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA4.267e-4650.84Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_RAT5.573e-4650.28Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RBD2A_ARATH7.278e-4650.83Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB2A_RAT7.278e-4652.63Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RABD1_ARATH9.505e-4648.91Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB8B_RAT9.505e-4647.94Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01090 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01090 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623999 ID=BQ623999; Name=BQ623999; organism=Citrus sinensis; type=EST; length=664bp
ATATATATATAAATATAAATGGCGAGGAGACCGGACGAGGAATACGATTA
CTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGGAAGTCGAACT
TACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACT
ATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAAT
AAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAA
CCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTACGATGTG
ACAAAACCAACAACATTTGAAAACGTGAGCCGGTGGCTGAAGGAGCTGAG
GGACCACGCAGACTCCAACATCGTGATCATGATGATTGGAAATAAGACTG
ATCTGAAACACCTCCGAGCTGTTGCAACAGAGGACGCCCAAAGCTATGCT
GAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAA
TGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCA
GCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAACATCAAAGAAG
GACAGACTATTGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCT
TGTTGCTCTTCATC
back to top