BQ624114

Overview
NameBQ624114
Unique NameBQ624114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_PYRHO (30S ribosomal protein S11P OS=Pyrococcus horikoshii GN=rps11p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  +    E GI  +HI++RA            AQ+A+RALAR+G+K        P  H
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPH 123          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_PYRAB (30S ribosomal protein S11P OS=Pyrococcus abyssi GN=rps11p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  +    E GI  +HI++RA            AQ+A+RALAR+G+K        P  H
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPH 123          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_METKA (30S ribosomal protein S11P OS=Methanopyrus kandleri GN=rps11p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.392e-22
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +G+AHI+ASFN+T I +TDL+G ET  R +GGM V ADR+ESSPYAAM AA+  +    E GITA+H+K+RA            AQ+A+RALAR+G+K        P  H
Sbjct:   14 WGIAHIYASFNNTIITITDLTGAETFARWSGGMVVDADREESSPYAAMKAARRAAEEAMEKGITAVHVKVRAPGGHGPKTPGPGAQAAIRALARAGLKIGRIEDVTPIPH 123          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_THEON (30S ribosomal protein S11P OS=Thermococcus onnurineus (strain NA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.375e-22
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  +    E G   +HIK+RA            AQ+A+RALAR+G++        P  H
Sbjct:   16 WGVAHIYSSYNNTIIHITDLTGAETVSRWSGGMVVKADRDEPSPYAAMIAAKRAAEEAMEKGFVGVHIKVRAPGGSKSKTPGPGAQAAIRALARAGLRIGRVEDVTPIPH 125          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_METB6 (30S ribosomal protein S11P OS=Methanoregula boonei (strain 6A8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.375e-22
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A +V+   +E GI  +H+K+RA            AQ+A+RALAR+GM+        P  H
Sbjct:    9 WGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAANVAAIAREKGIVGVHVKVRAPGQGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPH 118          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_THEGJ (30S ribosomal protein S11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps11p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.051e-22
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +GVAHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAM+AA+  +    E G   +HIK+RA            AQ+A+RALAR+G++        P  H
Sbjct:   15 WGVAHIYSSYNNTIIHITDITGAETVSRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGFVGVHIKVRAPGGSKSKSPGPGAQAAIRALARAGLRIGRVEDVTPIPH 124          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_SULSO (30S ribosomal protein S11P OS=Sulfolobus solfataricus GN=rps11p PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.080e-22
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSG 443
            +G+AHI+AS N+T + ++DL+G E + R +GGM VKADR++SSPYAAMLAA   ++   E GI ALHIK+RA            AQ A+RALAR+G
Sbjct:    9 WGIAHIYASQNNTLLTISDLTGAEIISRASGGMVVKADREKSSPYAAMLAANKAASDALEKGIMALHIKVRAPGGYGSKTPGPGAQPAIRALARAG 104          

HSP 2 Score: 28.4906 bits (62), Expect = 4.080e-22
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  451 IGRIEDVTPIPTDS 492
            IGRIEDVTPIP D+
Sbjct:  107 IGRIEDVTPIPHDT 120          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_THEAC (30S ribosomal protein S11P OS=Thermoplasma acidophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.089e-22
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  159 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS   KE  IT L IK+RA            AQ+A+RAL+R+G+K
Sbjct:    8 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSEALKEKEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLK 104          

HSP 2 Score: 27.7202 bits (60), Expect = 4.089e-22
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KI RIE+VTPIP D T
Sbjct:  102 GLKIVRIEEVTPIPHDGT 119          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 5.309e-22
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  159 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS   KE  IT L IK+RA            AQ+A+RAL+R+G+K
Sbjct:   10 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLK 106          

HSP 2 Score: 27.7202 bits (60), Expect = 5.309e-22
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KI RIE+VTPIP D T
Sbjct:  104 GLKIVRIEEVTPIPHDGT 121          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_CENSY (30S ribosomal protein S11P OS=Cenarchaeum symbiosum GN=rps11p PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.491e-21
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  129 PAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            P     +   G+AHI++S+N+T IH+TDL+G ET+   +GG+ V ADR ESSP+AAM AA  V    +  G T  HI++RA            AQ+A+RALAR G +
Sbjct:   66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAANKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFR 172          

HSP 2 Score: 30.8018 bits (68), Expect = 1.491e-21
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  442 G*KIGRIEDVTPIPTDST 495
            G +IGRI+DVTPIP D+T
Sbjct:  170 GFRIGRIDDVTPIPHDTT 187          
The following BLAST results are available for this feature:
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS11_PYRHO1.066e-2248.1830S ribosomal protein S11P OS=Pyrococcus horikoshi... [more]
RS11_PYRAB1.066e-2248.1830S ribosomal protein S11P OS=Pyrococcus abyssi GN... [more]
RS11_METKA1.392e-2250.0030S ribosomal protein S11P OS=Methanopyrus kandler... [more]
RS11_THEON2.375e-2248.1830S ribosomal protein S11P OS=Thermococcus onnurin... [more]
RS11_METB62.375e-2250.0030S ribosomal protein S11P OS=Methanoregula boonei... [more]
RS11_THEGJ4.051e-2247.2730S ribosomal protein S11P OS=Thermococcus gammato... [more]
RS11_SULSO4.080e-2252.0830S ribosomal protein S11P OS=Sulfolobus solfatari... [more]
RS11_THEAC4.089e-2253.6130S ribosomal protein S11P OS=Thermoplasma acidoph... [more]
RS11_THEVO5.309e-2253.6130S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_CENSY1.491e-2143.9330S ribosomal protein S11P OS=Cenarchaeum symbiosu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01205 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01205 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624114 ID=BQ624114; Name=BQ624114; organism=Citrus sinensis; type=EST; length=564bp
TGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCTAGCCTT
CTCAATCCATCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAATAGGGA
GCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGGAGC
ATGTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTTATT
CATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGGTGG
TATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGC
TTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCT
CTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGG
TCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAA
ATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAG
AAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGGTTGTCCCAT
TGGCTTGTTTTATG
back to top