BQ624114

Overview
NameBQ624114
Unique NameBQ624114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_METBF (30S ribosomal protein S11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.033e-17
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++        P  H
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGIHGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPH 115          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_METS3 (30S ribosomal protein S11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps11p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +G+A+I++S+N+T I VTD++G ET+ + +GG  V+ADR ++SP+AAM AA  ++   KE G   LHI++RA            AQ+ +RALAR+G+K        P  H
Sbjct:    7 WGIANIYSSYNNTIITVTDITGAETISQWSGGKVVRADRQQASPFAAMAAATRIADDAKEKGFVGLHIRVRAPGGNGHRSPGPGAQATIRALARAGIKIGKIEDITPIPH 116          
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.125e-17
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  156 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKNWSHRGCDPYSH 485
            +G+AH+ ASFN+T + VTD +G ETL + +GG  VK +RDE+SPYAAM  A+ ++    + GI  +H+++R             AQ+A+RALAR+G++        P  H
Sbjct:    7 WGIAHVHASFNNTIMTVTDQTGAETLAKSSGGSVVKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPH 116          
The following BLAST results are available for this feature:
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS11_METBF1.033e-1742.7330S ribosomal protein S11P OS=Methanosarcina barke... [more]
RS11_METS31.349e-1740.9130S ribosomal protein S11P OS=Methanobrevibacter s... [more]
RS11_HALSA5.125e-1740.0030S ribosomal protein S11P OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01205 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01205 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624114 ID=BQ624114; Name=BQ624114; organism=Citrus sinensis; type=EST; length=564bp
TGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCTAGCCTT
CTCAATCCATCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAATAGGGA
GCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGGAGC
ATGTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTTATT
CATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGGTGG
TATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGC
TTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCT
CTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGG
TCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAA
ATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAG
AAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGGTTGTCCCAT
TGGCTTGTTTTATG
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