BQ624222

Overview
NameBQ624222
Unique NameBQ624222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 2.382e-49
Identity = 97/142 (68.31%), Postives = 111/142 (78.17%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  107 DELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49
Identity = 97/142 (68.31%), Postives = 110/142 (77.46%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K A+ALSEG+GVIACIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATPEQAQEVH  LR+W+K NVS  VA   RIIYGGSV G  C ELA Q DIDGFLVGGASLK PEF  I+N+
Sbjct:  106 DELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLK-PEFIEIINA 246          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 96/142 (67.61%), Postives = 110/142 (77.46%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K   D +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  107 DELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 96/146 (65.75%), Postives = 111/146 (76.03%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 442
            ++F+G K AYALS+GL VIAC+GE L++REAG T  V   Q KA A+ +  W N+V+AYEPVWAIGTGKVA+P QAQEVH  LR W+K NV ADVA   RIIYGGSVNG+N  ELA Q DIDGFLVGGASLK PEF  I+ S T K
Sbjct:  107 NEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLK-PEFVDIIKSATVK 251          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49
Identity = 95/142 (66.90%), Postives = 111/142 (78.17%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K ++AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NV+  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  107 DELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49
Identity = 96/142 (67.61%), Postives = 110/142 (77.46%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA   RIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  107 DELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48
Identity = 96/142 (67.61%), Postives = 108/142 (76.06%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K A+ALSE +GVI CIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATPEQAQEVH  LR+WLK NVS DVA   RIIYGGSV G  C EL  Q DIDGFLVGGASLK PEF  I+N+
Sbjct:  106 DELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGFLVGGASLK-PEFIDIINA 246          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 98/142 (69.01%), Postives = 110/142 (77.46%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K  +ALSEGLGVIACIGE+L EREAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  107 DELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.307e-47
Identity = 94/142 (66.20%), Postives = 107/142 (75.35%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K A+ L   LGVIACIGE+L+EREAG T DV F+Q K  AD +  W  VV+AYEPVWAIGTGK A+PEQAQEVH  LR WL+ NVS  VA   RIIYGGSV G NC ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  106 DELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLK-PEFVDIINA 246          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47
Identity = 94/142 (66.20%), Postives = 106/142 (74.65%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ IG+K A+AL  GLGVIACIGE+L EREAG T  V F Q K  AD +  W  VV+AYEPVWAIGTGK A+P+QAQEVH  LR WLK NVS  VA   RIIYGGSV G  C ELA Q+D+DGFLVGGASLK PEF  I+N+
Sbjct:  106 DELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLK-PEFIDIINA 246          
The following BLAST results are available for this feature:
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CANFA2.382e-4968.31Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_XENLA4.064e-4968.31Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_GORGO6.932e-4967.61Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_COPJA6.932e-4965.75Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_MOUSE9.053e-4966.90Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_BOVIN9.053e-4967.61Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_XENTR1.182e-4867.61Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_RAT1.544e-4869.01Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPISA_DANRE1.307e-4766.20Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPISB_DANRE4.968e-4766.20Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01313 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01313 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624222 ID=BQ624222; Name=BQ624222; organism=Citrus sinensis; type=EST; length=657bp
AGATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGAC
TTGGTGTAATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGA
AAAACTTTTGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTAT
ACCCAGTTGGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
GAACTGGTAAAGTGGCCACCCCCGAGCAGGCTCAGGAAGTACATGCTGCT
CTTCGTGATTGGCTTAAAAACAATGTCTCAGCAGACGTTGCCACTAAAAC
ACGTATTATCTATGGAGGGTCAGTAAATGGAAGCAATTGTGCTGAACTTG
CAAAACAAGAGGATATTGATGGTTTTCTGGTTGGTGGCGCTTCCTTGAAG
GGCCCAGAGTTTGCTACCATTGTCAATTCCGTAACATCCAAGAAAGTAGC
TGCTTGATGTATAAACCTGTTCTGTCAAGATCAACCAATAATAATGGGCT
AAGAGAATCTATATCAGTTTAAAGCTAATTAGTGTAACCAGCCTATGCCC
TTGCTATGTTCAATGAAAGTTTTGATAGTTTATTTATTTGTTTCTCCTTC
CCCAAACAATCGGAGATTCCTTCTGTTTCTCTATCGGGGGCTGAACTTGT
TTGATAC
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