BQ624222

Overview
NameBQ624222
Unique NameBQ624222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 430
            D+ + +K   +L   L  + C GE L++RE  KT +V  +Q+KA+ D I ++DNV++AYEP+WAIGTGK ATPEQAQ VH  +R  +K+      A + RI+YGGSVN  NC+ L +QEDIDGFLVG ASLK   F  I+ S
Sbjct:  106 DEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKS 246
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_ALKOO (Triosephosphate isomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 72/143 (50.35%), Postives = 94/143 (65.73%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 427
            D+ + KK   A+ E L  I CIGE L+EREA +TFDV  +QL    + +P+   DNVV+AYEP+WAIGTGK A+ E+AQ V A +R  ++     D++ + RI YGGSV  SN  E+  + DIDG LVGGASLK  EF  I+N
Sbjct:  105 DETVNKKVKKAIKENLKPIVCIGESLEEREANQTFDVIKKQLLGAFEGVPAEAMDNVVLAYEPIWAIGTGKTASSEEAQTVIAYIRSLIEEKYGVDISEEVRIQYGGSVKASNATEIMNETDIDGALVGGASLKAEEFLGIIN 247
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_SHISS (Triosephosphate isomerase OS=Shigella sonnei (strain Ss046) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  106 DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_SHIFL (Triosephosphate isomerase OS=Shigella flexneri GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  106 DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_SHIF8 (Triosephosphate isomerase OS=Shigella flexneri serotype 5b (strain 8401) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  106 DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_SHIDS (Triosephosphate isomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  106 DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_SHIBS (Triosephosphate isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  106 DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_SHIB3 (Triosephosphate isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  106 DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 74/141 (52.48%), Postives = 97/141 (68.79%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 421
            D+ + +K A A ++GL  + CIGE L+EREAGKT +V  +QL +  +A  + ++ N VIAYEPVWAIGTG  ATP+QAQ+VHAA+R  L     A+VA K +++YGGSV  +N AEL    DIDG L+GGASL   EF  I
Sbjct:  106 DEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAI 245
[Close]
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_ESCF3 (Triosephosphate isomerase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  106 DELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
The following BLAST results are available for this feature:
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PLAF71.269e-3450.70Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_ALKOO3.126e-3350.35Triosephosphate isomerase OS=Alkaliphilus oremland... [more]
TPIS_SHISS1.551e-3252.32Triosephosphate isomerase OS=Shigella sonnei (stra... [more]
TPIS_SHIFL1.551e-3252.32Triosephosphate isomerase OS=Shigella flexneri GN=... [more]
TPIS_SHIF81.551e-3252.32Triosephosphate isomerase OS=Shigella flexneri ser... [more]
TPIS_SHIDS1.551e-3252.32Triosephosphate isomerase OS=Shigella dysenteriae ... [more]
TPIS_SHIBS1.551e-3252.32Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_SHIB31.551e-3252.32Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_PSEPG1.551e-3252.48Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_ESCF31.551e-3252.32Triosephosphate isomerase OS=Escherichia fergusoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01313 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01313 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624222 ID=BQ624222; Name=BQ624222; organism=Citrus sinensis; type=EST; length=657bp
AGATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGAC
TTGGTGTAATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGA
AAAACTTTTGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTAT
ACCCAGTTGGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
GAACTGGTAAAGTGGCCACCCCCGAGCAGGCTCAGGAAGTACATGCTGCT
CTTCGTGATTGGCTTAAAAACAATGTCTCAGCAGACGTTGCCACTAAAAC
ACGTATTATCTATGGAGGGTCAGTAAATGGAAGCAATTGTGCTGAACTTG
CAAAACAAGAGGATATTGATGGTTTTCTGGTTGGTGGCGCTTCCTTGAAG
GGCCCAGAGTTTGCTACCATTGTCAATTCCGTAACATCCAAGAAAGTAGC
TGCTTGATGTATAAACCTGTTCTGTCAAGATCAACCAATAATAATGGGCT
AAGAGAATCTATATCAGTTTAAAGCTAATTAGTGTAACCAGCCTATGCCC
TTGCTATGTTCAATGAAAGTTTTGATAGTTTATTTATTTGTTTCTCCTTC
CCCAAACAATCGGAGATTCCTTCTGTTTCTCTATCGGGGGCTGAACTTGT
TTGATAC
back to top