BQ624229

Overview
NameBQ624229
Unique NameBQ624229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.089e-22
Identity = 72/193 (37.31%), Postives = 91/193 (47.15%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLYPGGPFDP 569
            WYGPDR  +L        + P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D+LYPGG FDP
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNP---NLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDP 195          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.259e-22
Identity = 68/190 (35.79%), Postives = 88/190 (46.32%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLYPGGPFDP 569
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D LYPGG FDP
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDP 197          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.209e-21
Identity = 67/190 (35.26%), Postives = 92/190 (48.42%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLYPGGPFDP 569
            WYG DR ++L  G    S  P YL+GE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G   ++ED +YPGG FDP
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDP 196          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.209e-21
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLYPGGPFDP 569
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    I    + A+ A +++L+G  E YRI  G   ++ D +YPGG FDP
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 176          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 69/191 (36.13%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   12 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLYPGGPFDP 569
            ++YGP+R  +L  G    +  P YLTGE PG+                                      YG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+G  E YR+  G   E  D LYPG  FDP
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGD--------------------------------------YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDP 184          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 68/190 (35.79%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLYPGGPFDP 569
            WYG DR ++L  G L   E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    +   +L+     ++VL+G  E YRI  G   ++ D LYPGG FDP
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDP 197          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 74/193 (38.34%), Postives = 91/193 (47.15%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLYPGGPFDP 569
            WYG DR  FL        + P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D LYPGG FDP
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDP 195          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.694e-21
Identity = 67/190 (35.26%), Postives = 88/190 (46.32%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLYPGGPFDP 569
            WYGPDR  +L        E P YLTGE PG+                                      YG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D LYPGG FDP
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDP 198          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.694e-21
Identity = 67/190 (35.26%), Postives = 88/190 (46.32%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLYPGGPFDP 569
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G    + D LYPGG FDP
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDP 198          
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.694e-21
Identity = 70/190 (36.84%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   15 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLYPGGPFDP 569
            WYGPDR  +L        +IP YLTGE PG+                                      YG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D LYPGG FDP
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDP 196          
The following BLAST results are available for this feature:
BLAST of BQ624229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB21_SILPR7.089e-2237.31Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP9.259e-2235.79Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_POLMU1.209e-2135.26Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_SOYBN1.209e-2135.26Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLRE2.063e-2136.13Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_WHEAT2.063e-2135.79Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI2.063e-2138.34Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP2.694e-2135.26Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_PETSP2.694e-2135.26Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB215_PEA2.694e-2136.84Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01320 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01320 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624229 ID=BQ624229; Name=BQ624229; organism=Citrus sinensis; type=EST; length=569bp
AAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAG
GGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCC
CGGAGAGTAGGATTGTCCTTCTTCTTCCCTTCAGGGCCTCAGATGATTTT
TCGTGAACATTGTTTAGTTGAATGTTTTTTAAAACATTAATACATAATGA
ATTTTGTTGCTTTAATGCAGCTATGGTTACGATCCTTTTGGTCTCAGCAA
GAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCA
GATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAAC
AAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGC
TCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAA
TCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCT
GAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCTTTACCC
AGGTGGGCCATTTGACCCA
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