BQ624271

Overview
NameBQ624271
Unique NameBQ624271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTR----TQSSEA-*PQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFP----MGTKPHCYSPFTNPSAAC 265
            EVDCE LK+CCETLT+ENRRLH+E  +    T S+ A       + +PAATL++CPSCER+    A G S           T PH +SPF   SAAC
Sbjct:  152 EVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAAAGASPTAAADRTNKPTAPHLFSPFAK-SAAC 247          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHM-PAATLTMCPSCERI 169
            EVDCEFLK+CCETLT+ENRRL KE    ++ +     LYM+M P  TLTMCPSCER+
Sbjct:  140 EVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERV 196          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHM-PAATLTMCPSCERI 169
            EVDCEFLK+CCETLT+ENRRL KE    ++ +     LYM+M P  TLTMCPSCER+
Sbjct:  140 EVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERV 196          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHM-PAATLTMCPSCERI 169
            EVDCEFL++CCE LT+ENRRL KE T  ++ +  PQ  YMHM P  TLTMCPSCE +
Sbjct:  187 EVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQ-FYMHMSPPTTLTMCPSCEHV 242          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHM-PAATLTMCPSCERIGGGIA 184
            EVDCE+LK+CC+ LT+ENRRL KE +  ++ +  P  LYMHM P  TLTMCPSCER+    A
Sbjct:  221 EVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPH-LYMHMTPPTTLTMCPSCERVSSSAA 281          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTR----TQSSEA-*PQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMG--------TKPHCYSPFTNPSAAC 265
            EVDCE LK+CCETLT+ENRRLH+E  +    T S+ A       + +PAATL++CPSCER+    A   + G  P          T PH +SPF   SAAC
Sbjct:  152 EVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAA---AAGASPTAAADRTNKPTAPHLFSPFAK-SAAC 248          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKP 226
            EVDCE+LK+C E LT+ENRRL KE    ++ +  PQ      P  TL MCPSCER+GG  +  +     P+   P
Sbjct:  188 EVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMCPSCERVGGPSSSNHHHNHRPVSINP 262          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 40/83 (48.19%), Postives = 47/83 (56.63%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKE-----PTRTQSSEA*PQPLY--MHMPAATLTMCPSCERI-GGGIADGNSKGPFPMGTKP 226
            EVDCE LK+CCETLTDENRRLH+E       +  ++ A P  LY     P  TLTMCPSCER+        N+ G  P    P
Sbjct:  215 EVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERVASAATTTRNNSGAAPARPVP 297          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 40/83 (48.19%), Postives = 47/83 (56.63%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKE-----PTRTQSSEA*PQPLY--MHMPAATLTMCPSCERI-GGGIADGNSKGPFPMGTKP 226
            EVDCE LK+CCETLTDENRRLH+E       +  ++ A P  LY     P  TLTMCPSCER+        N+ G  P    P
Sbjct:  215 EVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERVASAATTTRNNSGAAPARPVP 297          
The following BLAST results are available for this feature:
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HOX15_ORYSJ9.359e-1448.45Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX17_ORYSJ1.596e-1363.16Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI1.596e-1363.16Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HAT4_ARATH1.596e-1363.16Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
ATHB4_ARATH1.596e-1358.06Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX15_ORYSI3.557e-1346.53Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HAT2_ARATH3.932e-1245.33Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HOX1_ORYSJ5.136e-1248.19Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI5.136e-1248.19Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01362 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01362 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624271 ID=BQ624271; Name=BQ624271; organism=Citrus sinensis; type=EST; length=574bp
AGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTGATG
AAAACAGAAGGCTGCATAAGGAGCCTACAAGAACTCAAAGCTCTGAAGCC
TAGCCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCCTTCTTGTGAACGGATCGGCGGCGGCATCGCCGATGGAAACTCGAAGG
GCCCGTTTCCCATGGGTACTAAGCCTCACTGCTATAGTCCCTTCACCAAT
CCTTCAGCAGCTTGTTGATTGAGTTGTTAGATAGGATTAGGAAAAGAAAA
TCAGATTAAATTAAATTATAAAAATTATATGGAACACTCCAACAAACCCC
GCTATTTTTTTTGGGTCAGGGCTTGTAGTGATCAGAGATATTAGTGTGAT
TAATTAAACTGTAGAAATTATTACTAGATGCTACAGATTATATATAGTTT
TATGTTAATTGCTAATTAATCTCCTTTTAAAATCATCTTCTTCTTCTTTT
TTTTTTTTATATGTTTGGAAATTGTGAAACAAATCAAGTTATATCTATGA
AAGCATTTTTAACTAAAAGCCCAC
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