BQ624275

Overview
NameBQ624275
Unique NameBQ624275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.908e-62
Identity = 96/118 (81.36%), Postives = 104/118 (88.14%), Query Frame = 3
Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSN SICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118          

HSP 2 Score: 47.7506 bits (112), Expect = 3.908e-62
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIA +YK+D+ KY    R WTQKYAM
Sbjct:  118 PLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.644e-62
Identity = 95/118 (80.51%), Postives = 105/118 (88.98%), Query Frame = 3
Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGP +SPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118          

HSP 2 Score: 47.3654 bits (111), Expect = 6.644e-62
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIA +YK+D+ +Y    R WTQKYAM
Sbjct:  118 PLVPEIARIYKTDRERYNQLAREWTQKYAM 147          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.664e-62
Identity = 92/118 (77.97%), Postives = 106/118 (89.83%), Query Frame = 3
Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            M+ KRI KEL DL +DPP+SCSAGPV +D++HWQA+IMGP DSPYAGGVF ++IHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDP
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDP 118          

HSP 2 Score: 51.6026 bits (122), Expect = 8.664e-62
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIAH+YK D+ KYE+T + WT+KYA+
Sbjct:  118 PLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.638e-60
Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 3
Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++HPN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDP
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDP 118          

HSP 2 Score: 50.0618 bits (118), Expect = 4.638e-60
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIA +YK+D+ KY  T R WTQKYAM
Sbjct:  118 PLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.638e-60
Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 3
Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++HPN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDP
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDP 118          

HSP 2 Score: 50.0618 bits (118), Expect = 4.638e-60
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIA +YK+D+ KY  T R WTQKYAM
Sbjct:  118 PLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.102e-42
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL ++  DPP +CSAGP  ++++ W +TI+GP  S Y GGVF + IHF P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 203          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.194e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 172          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.194e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 172          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.194e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 164          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.194e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 164          
The following BLAST results are available for this feature:
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UB2D3_BOVIN3.908e-6281.36Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC2_CAEEL6.644e-6280.51Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC4_CANAL8.664e-6277.97Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
U2D2B_RAT4.638e-6077.97Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE4.638e-6077.97Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBCD2_DROME4.102e-4265.81Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E2_MOUSE1.194e-4165.81Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.194e-4165.81Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E1_MOUSE1.194e-4165.81Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN1.194e-4165.81Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624275 ID=BQ624275; Name=BQ624275; organism=Citrus sinensis; type=EST; length=606bp
GTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCA
CCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCG
CAAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAG
TCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGAT
CCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTG
GCAAGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTAT
TTTTAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAG
GTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAG
CATCTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTT
CAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGAC
GACCCCTCTTGTACCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCA
AATATGAATCCACGGGCAGGAGCTGGACACAGAAGTATGCCATGGGATGA
AGGTTG
back to top