BQ624275

Overview
NameBQ624275
Unique NameBQ624275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.010e-40
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 178          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.010e-40
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 178          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.010e-40
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 178          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.041e-33
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 509
            A KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P+
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPA 122          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.665e-33
Identity = 59/118 (50.00%), Postives = 88/118 (74.58%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 509
            + KRI +E+ +L  DPP  CSAGP  ++++HW ATI+GPS +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P+
Sbjct:   37 SGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPA 154          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.873e-32
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            A KR+ KE+ D+ K PP+ CSA  V +++  W+AT+ GP  SP+  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+P
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNP 119          

HSP 2 Score: 34.6538 bits (78), Expect = 1.873e-32
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYA 591
            PL  EIA  +K+D+  +  T + WT+KYA
Sbjct:  119 PLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.132e-32
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  216 SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            S G  + +++ W A I GP  +PY GG+F ++I FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDP
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDP 124          

HSP 2 Score: 30.0314 bits (66), Expect = 4.132e-32
Identity = 10/29 (34.48%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYA 591
            PLVPEI  ++K+++ +++   R +T ++A
Sbjct:  124 PLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 9.479e-31
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 509
            A +R++++ K LQ+DPPT  S  P   ++  W A I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P+
Sbjct:    5 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPA 122          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.840e-31
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  162 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            +RI+KE + L ++P    +A P   +  ++   + GP+DSP+ GGVF + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDP
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDP 120          

HSP 2 Score: 31.187 bits (69), Expect = 9.840e-31
Identity = 12/30 (40.00%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PL  ++A ++K ++A+     R WTQKYA+
Sbjct:  120 PLANDVAELWKVNEAEAIRNAREWTQKYAV 149          
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.617e-30
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  156 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 509
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P+
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPA 122          
The following BLAST results are available for this feature:
BLAST of BQ624275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UB2E3_MOUSE1.010e-4064.96Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN1.010e-4064.96Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN1.010e-4064.96Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC3_ARATH2.041e-3354.24Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
COP10_ARATH2.665e-3350.00Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBCB_DICDI1.873e-3250.85Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC31_ARATH4.132e-3256.70Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBCD6_DROME9.479e-3149.15Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2N_DROME9.840e-3148.70Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC2_WHEAT1.617e-3050.00Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624275 ID=BQ624275; Name=BQ624275; organism=Citrus sinensis; type=EST; length=606bp
GTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCA
CCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCG
CAAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAG
TCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGAT
CCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTG
GCAAGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTAT
TTTTAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAG
GTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAG
CATCTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTT
CAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGAC
GACCCCTCTTGTACCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCA
AATATGAATCCACGGGCAGGAGCTGGACACAGAAGTATGCCATGGGATGA
AGGTTG
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