BQ624279

Overview
NameBQ624279
Unique NameBQ624279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.150e-38
Identity = 84/133 (63.16%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 450
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.150e-38
Identity = 84/133 (63.16%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 450
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.390e-37
Identity = 83/133 (62.41%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 450
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +   D+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASTVDDD 133          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.390e-37
Identity = 83/133 (62.41%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 450
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +   D+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASTVDDD 133          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.537e-36
Identity = 82/133 (61.65%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 450
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK  +S     D+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSKVSTVDDD 133          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.879e-34
Identity = 75/99 (75.76%), Postives = 78/99 (78.79%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420
            LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH +LLPKK+G
Sbjct:   27 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.454e-34
Identity = 75/99 (75.76%), Postives = 76/99 (76.77%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420
            LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP K G
Sbjct:   31 LQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.467e-34
Identity = 74/99 (74.75%), Postives = 76/99 (76.77%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420
            LQFPVGRIARFLK+GKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP K G
Sbjct:   31 LQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.325e-34
Identity = 74/99 (74.75%), Postives = 75/99 (75.76%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420
            LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNK  RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G
Sbjct:   28 LQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 126          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.713e-33
Identity = 79/131 (60.31%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKAA 441
            MAGRGK                  LQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKK RIVPRHIQLA+RNDEEL KLLGDVTIA+GGV+PNIH +LLPKK+ G  G +AA
Sbjct:    1 MAGRGK--GKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGEEAA 129          
The following BLAST results are available for this feature:
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A7_ORYSJ8.150e-3863.16Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI8.150e-3863.16Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A1_ORYSJ1.390e-3762.41Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]
H2A1_ORYSI1.390e-3762.41Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A4_WHEAT1.537e-3661.65Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2AX_PICAB1.879e-3475.76Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ARATH2.454e-3475.76Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH5.467e-3474.75Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_CICAR9.325e-3474.75Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2A4_VOLCA2.713e-3360.31Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01370 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01370 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624279 ID=BQ624279; Name=BQ624279; organism=Citrus sinensis; type=EST; length=614bp
CCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTAAGAGCTTATTCACTTGA
GATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGGCGGCGAAGAAGGCCA
CCTCACGTAGCAGCAAAGCGGGGCTTCAATTTCCCGTCGGTCGTATTGCC
AGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGTCGGTGCCGGAGCCCC
GGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGGTTTTGGAAT
TAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAATTGTCCCTCGC
CACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCAAGCTTCTTGG
GGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATCCACAACCTTC
TCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAGGCTGCTGATGAAGAC
AGTTAAATTCTCATCACTAGAAGAGTCAAAGTGATGATCAACACTCTTTG
TGTTAATTGTGCTATGTGACATTTGCCTTTTTAGTGTTTGTTTAGTTAGT
TTGTTGTTTTTGTGGGTGTAGGTAGGATTTCAATAACTTGTTTGGGTATA
ATTTCTCTAGCTGC
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