BQ624279

Overview
NameBQ624279
Unique NameBQ624279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.713e-33
Identity = 79/131 (60.31%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKAA 441
            MAGRGK                  LQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKK RIVPRHIQLA+RNDEEL KLLGDVTIA+GGV+PNIH +LLPKK+ G  G +AA
Sbjct:    1 MAGRGK--GKTAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGEEAA 129          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33
Identity = 78/131 (59.54%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKAA 441
            MAGRGK                  LQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKK RIVPRHIQLA+RNDEEL KLLG+VTIA+GGV+PNIH +LLPKKT G  G + A
Sbjct:    1 MAGRGK--GKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEETA 129          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 72/99 (72.73%), Postives = 75/99 (75.76%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH  LLPKK G
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 125          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 72/99 (72.73%), Postives = 75/99 (75.76%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH  LLPKK G
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 125          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.918e-32
Identity = 72/102 (70.59%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 429
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI  +LLPKK G  G
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGGKG 128          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.918e-32
Identity = 72/102 (70.59%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 429
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI  +LLPKK G  G
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGGKG 128          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.944e-31
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 447
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTG +G  A+ E
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGKNASQE 133          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 450
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKTGT   K A ++
Sbjct:   26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGTKPGKNASQE 134          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSK 435
            LQFPVGR+ RFL+ G YA RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG+  SK
Sbjct:   23 LQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126          
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSK 435
            LQFPVGR+ RFL+ G YA RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG+  SK
Sbjct:   23 LQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126          
The following BLAST results are available for this feature:
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A3_VOLCA2.713e-3360.31Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A_CHLRE7.894e-3359.54Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2AXB_ORYSJ3.000e-3272.73Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI3.000e-3272.73Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ3.918e-3270.59Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI3.918e-3270.59Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A_NEUCR1.944e-3162.04Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_PODAN3.317e-3161.47Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]
H2A_PARAN3.317e-3164.42Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A3_PSAMI3.317e-3164.42Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01370 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01370 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624279 ID=BQ624279; Name=BQ624279; organism=Citrus sinensis; type=EST; length=614bp
CCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTAAGAGCTTATTCACTTGA
GATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGGCGGCGAAGAAGGCCA
CCTCACGTAGCAGCAAAGCGGGGCTTCAATTTCCCGTCGGTCGTATTGCC
AGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGTCGGTGCCGGAGCCCC
GGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGGTTTTGGAAT
TAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAATTGTCCCTCGC
CACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCAAGCTTCTTGG
GGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATCCACAACCTTC
TCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAGGCTGCTGATGAAGAC
AGTTAAATTCTCATCACTAGAAGAGTCAAAGTGATGATCAACACTCTTTG
TGTTAATTGTGCTATGTGACATTTGCCTTTTTAGTGTTTGTTTAGTTAGT
TTGTTGTTTTTGTGGGTGTAGGTAGGATTTCAATAACTTGTTTGGGTATA
ATTTCTCTAGCTGC
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