BQ624279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.713e-33 Identity = 79/131 (60.31%), Postives = 87/131 (66.41%), Query Frame = 1 Query: 52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKAA 441 MAGRGK LQFPVGRIAR+LK GKYAER+GAGAP GNAARDNKK RIVPRHIQLA+RNDEEL KLLGDVTIA+GGV+PNIH +LLPKK+ G G +AA Sbjct: 1 MAGRGK--GKTAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGEEAA 129
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33 Identity = 78/131 (59.54%), Postives = 86/131 (65.65%), Query Frame = 1 Query: 52 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT-GTSGSKAA 441 MAGRGK LQFPVGRIAR+LK GKYAER+GAGAP GNAARDNKK RIVPRHIQLA+RNDEEL KLLG+VTIA+GGV+PNIH +LLPKKT G G + A Sbjct: 1 MAGRGK--GKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEETA 129
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32 Identity = 72/99 (72.73%), Postives = 75/99 (75.76%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH LLPKK G Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 125
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32 Identity = 72/99 (72.73%), Postives = 75/99 (75.76%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 420 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH LLPKK G Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 125
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.918e-32 Identity = 72/102 (70.59%), Postives = 76/102 (74.51%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 429 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI +LLPKK G G Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGGKG 128
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.918e-32 Identity = 72/102 (70.59%), Postives = 76/102 (74.51%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 429 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI +LLPKK G G Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGGKG 128
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3) HSP 1 Score: 135.576 bits (340), Expect = 1.944e-31 Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 447 L FPVGR+ R L+ G YA+RVGAGAP GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH LLPKKTG +G A+ E Sbjct: 26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGKNASQE 133
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3) HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31 Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 450 L FPVGR+ R L+ G YA+RVGAGAP GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH LLPKKTGT K A ++ Sbjct: 26 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGTKPGKNASQE 134
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31 Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSK 435 LQFPVGR+ RFL+ G YA RVGAGAP GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI +LLPKKTG+ SK Sbjct: 23 LQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31 Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 1 Query: 124 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSK 435 LQFPVGR+ RFL+ G YA RVGAGAP GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI +LLPKKTG+ SK Sbjct: 23 LQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126 The following BLAST results are available for this feature:
BLAST of BQ624279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 235
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ624279 ID=BQ624279; Name=BQ624279; organism=Citrus sinensis; type=EST; length=614bpback to top |