BQ624287

Overview
NameBQ624287
Unique NameBQ624287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM_TRYBG (Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D + +G ++F E + L+   + +    ++E++ E FR FD+DGNG I+AAEL   M  +G  LT  E+ EM+READ +GDG I++ EF  +M
Sbjct:   48 ELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSD--SEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM_TRYBB (Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D + +G ++F E + L+   + +    ++E++ E FR FD+DGNG I+AAEL   M  +G  LT  E+ EM+READ +GDG I++ EF  +M
Sbjct:   48 ELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSD--SEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM_SACJA (Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E + ++   + +    ++E+++E F+ FD+DGNG I+AAEL   M  +G  LT  E+ EM+READ +GDG I++ EF  +M
Sbjct:   48 ELADMINEVDADGNGTIDFPEFLTMMARKMKDTD--SEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM_CAPAN (Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 40/101 (39.60%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E + L+   + +    ++E+L E FR FD+D NG I+AAEL   M  +G  LT  E+ EM+READ +GDG I+++EF  +M
Sbjct:   48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALMS_CHICK (Calmodulin, striated muscle OS=Gallus gallus GN=CCM1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 37/103 (35.92%), Postives = 67/103 (65.05%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQ 317
            +L  ++ ++D++ +G ++F E ++L+   + +    ++E++ E FR FD+DGNG I+AAEL   M  +G  LT  E+ EM++EAD N DG +++ EF  +M +
Sbjct:   48 ELQDMVGEVDADGSGTIDFPEFLSLMARKMRDSD--SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNNDGQVNYEEFVRMMTE 148          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM5_SOLTU (Calmodulin-5/6/7/8 OS=Solanum tuberosum GN=PCM5 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 40/101 (39.60%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E + L+   + +    ++E+L E FR FD+D NG I+AAEL   M  +G  LT  E+ EM+READ +GDG I+++EF  +M
Sbjct:   48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM3_ORYSJ (Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CAM3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 40/101 (39.60%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E + L+   + +    ++E+L E FR FD+D NG I+AAEL   M  +G  LT  E+ EM+READ +GDG I+++EF  +M
Sbjct:   48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYDEFVKVM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM3_ORYSI (Calmodulin-3 OS=Oryza sativa subsp. indica GN=CAM3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 40/101 (39.60%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E + L+   + +    ++E+L E FR FD+D NG I+AAEL   M  +G  LT  E+ EM+READ +GDG I+++EF  +M
Sbjct:   48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM2_SOLTU (Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=PCM2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 40/101 (39.60%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E + L+   + +    ++E+L E FR FD+D NG I+AAEL   M  +G  LT  E+ EM+READ +GDG I+++EF  +M
Sbjct:   23 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVM 121          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSJ (Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 40/101 (39.60%), Postives = 65/101 (64.36%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E + L+   + +    ++E+L E FR FD+D NG I+AAEL   M  +G  LT  E+ EM+READ +GDG I++ EF  +M
Sbjct:   48 ELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146          
The following BLAST results are available for this feature:
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CALM_TRYBG9.174e-1538.61Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV... [more]
CALM_TRYBB9.174e-1538.61Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2[more]
CALM_SACJA9.174e-1537.62Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1[more]
CALM_CAPAN9.174e-1539.60Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3[more]
CALMS_CHICK9.174e-1535.92Calmodulin, striated muscle OS=Gallus gallus GN=CC... [more]
CALM5_SOLTU9.174e-1539.60Calmodulin-5/6/7/8 OS=Solanum tuberosum GN=PCM5 PE... [more]
CALM3_ORYSJ9.174e-1539.60Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM3_ORYSI9.174e-1539.60Calmodulin-3 OS=Oryza sativa subsp. indica GN=CAM3... [more]
CALM2_SOLTU9.174e-1539.60Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=... [more]
CALM2_ORYSJ9.174e-1539.60Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CA... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624287 ID=BQ624287; Name=BQ624287; organism=Citrus sinensis; type=EST; length=474bp
CCGGCGACCAGCTGCACATTTTGTTGGCCGACATGGATTCCAACCGCAAC
GGCCTCGTCGAATTCGATGAATTGGTTGCTCTGATACTCCCCGACATCAG
CGAGCAAGTCTTGGTCAACCAAGAACAACTCATGGAGGTCTTTCGGTCCT
TCGATCGCGACGGCAACGGCCAAATCACTGCGGCCGAGCTCGCGGGCTCC
ATGGCCAAAATGGGCCACCCTTTGACGTACGGCGAGCTATCGGAGATGAT
GAGGGAGGCCGACACCAATGGCGACGGTGTCATTAGTTTTAATGAGTTCG
CTACCATTATGGCACAGTCTGCTGCCGACTTTCTCGGCCTTAAGCTTGCG
TAGGCTGCAGCAGGGTACGTTAAATAATTAAAAAAATACGGGGTTTTGAT
GTCGTCGATATGTAAATTAGTTAATTTGCATCACAAGAACTACGTATAAT
TGTTATCAAGTTTGATGTGATGGA
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