BQ624296

Overview
NameBQ624296
Unique NameBQ624296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_THISH (Peptide methionine sulfoxide reductase msrB OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=msrB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.089e-37
Identity = 71/123 (57.72%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  132 ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 500
            I+DE  + RL+ E Y +TR+ GTE  F+G Y++    G YHCICCD PLF S  KFDSG+GWPSY+QP+  +  S +  +   M R+EV CA CDAHLGHVF DGPPPTG RYCINS SL  K
Sbjct:   11 ITDESLRERLSPEAYAVTRRAGTEPPFSGRYYDHHETGIYHCICCDAPLFSSEHKFDSGSGWPSYWQPVSGDALSVVRDTSHGMIREEVRCARCDAHLGHVFPDGPPPTGLRYCINSLSLDFK 133          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB2_RAT (Methionine-R-sulfoxide reductase B2, mitochondrial OS=Rattus norvegicus GN=Msrb2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.190e-36
Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  129 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG--------SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP 503
            S+S  +W+++LT EQ+Y+TR+KGTE  F+G Y   K  G YHC+CCD+PLF S  K+ SGTGWPS+ +  G        + +  +LD S +  PR EV+C  C+AHLGHVF DGP PTG+R+CINS +LK KP
Sbjct:   40 SLSKADWQKKLTPEQFYVTREKGTEAPFSGMYLKNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTKGSDESHTGILRRLDTS-LGCPRMEVVCKQCEAHLGHVFPDGPDPTGQRFCINSVALKFKP 171          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_RALSO (Peptide methionine sulfoxide reductase msrB OS=Ralstonia solanacearum GN=msrB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.029e-36
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            +D EW+ +L+  +Y +TR+  TER FTG YW+    G YHC+CC TPLFESSTKFD+G GWPSY+ PI   + ++       M R EV C  C AHLGHVF+DGP PTG RYCINSA+LK
Sbjct:    6 TDAEWRDQLSDIEYRVTREAATERPFTGRYWDHWARGIYHCVCCGTPLFESSTKFDAGCGWPSYFAPINGEVIAEKTDHSHGMVRIEVQCKQCGAHLGHVFEDGPAPTGLRYCINSAALK 125          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_CELJU (Peptide methionine sulfoxide reductase msrB OS=Cellvibrio japonicus (strain Ueda107) GN=msrB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.029e-36
Identity = 73/127 (57.48%), Postives = 85/127 (66.93%), Query Frame = 3
Query:  120 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSN-MKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 497
            D    +D  W+ +LT EQY I R+KGTER FTGEYW    PG YHC CC   LF++ TKFD+G GWPS+Y P     ++ +LD S   M R EVLC  CD HLGHVF DGP PTG RYCINSAS+ L
Sbjct:    3 DNEKFNDALWREKLTPEQYRICREKGTERPFTGEYWQEFRPGRYHCRCCGELLFDADTKFDAGCGWPSFYTPATKTAVREQLDTS-HGMYRTEVLCRRCDCHLGHVFTDGPEPTGLRYCINSASIVL 128          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SYNR3 (Peptide methionine sulfoxide reductase msrB OS=Synechococcus sp. (strain RCC307) GN=msrB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.650e-36
Identity = 69/129 (53.49%), Postives = 83/129 (64.34%), Query Frame = 3
Query:  120 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            D    S+ +W+ +LT EQ+ ITR+ GTERAFTG YWN K  G Y CICC   LF S  KFDSGTGWPS+++ +       +      M R E+ CA CD+HLGHVF D P PTG RYC+NSASL  K K
Sbjct:    7 DPVEASENDWRSKLTPEQFRITREGGTERAFTGAYWNHKGDGMYRCICCGAELFRSDRKFDSGTGWPSFWEGVNPEAIRTIQDVSHGMVRTEIRCAKCDSHLGHVFQDSPTPTGLRYCVNSASLDFKDK 135          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPK (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain KT2440) GN=msrB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.650e-36
Identity = 67/122 (54.92%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  141 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            +EW+  L  EQY + R KGTER F+G+Y + +  G YHCICC  PLF++ TKFD+G GWPS+Y PI  +   ++  +   M R EV CA CDAHLGHVF DGPPPTG RYCINS  + L+P+
Sbjct:    9 DEWRSMLDPEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCGLPLFDAQTKFDAGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDGPPPTGLRYCINSVCIDLRPR 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_LEPIN (Peptide methionine sulfoxide reductase msrB OS=Leptospira interrogans GN=msrB PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.650e-36
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 500
            SDE+WK+ LT EQY I RQKGTE AFTG  +  +  GTY C  C   LF S TK++SG+GWPS+YQP+   +  K   S   M R E+LC+ C  HLGHVF+DGP PTG RYCINSASLK +
Sbjct:    9 SDEDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWPSFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDGPRPTGLRYCINSASLKFQ 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_LEPIC (Peptide methionine sulfoxide reductase msrB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=msrB PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.650e-36
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 500
            SDE+WK+ LT EQY I RQKGTE AFTG  +  +  GTY C  C   LF S TK++SG+GWPS+YQP+   +  K   S   M R E+LC+ C  HLGHVF+DGP PTG RYCINSASLK +
Sbjct:    9 SDEDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWPSFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDGPRPTGLRYCINSASLKFQ 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_HERAR (Peptide methionine sulfoxide reductase msrB OS=Herminiimonas arsenicoxydans GN=msrB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.650e-36
Identity = 69/121 (57.02%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            +D EW+  L  E+Y +TR   TE  F+G YW+    G Y C+CC+TPLF S  KFDSG GWPSY+  +   N+K K+D +   M R EV+C VCDAHLGHVF+DGPPPTG RYCINSASL+
Sbjct:    8 TDAEWRAMLDDEEYDVTRHAATEAPFSGRYWDHHEHGIYTCVCCNTPLFASDAKFDSGCGWPSYFTALNPDNVKEKIDRA-YGMIRTEVICNVCDAHLGHVFNDGPPPTGLRYCINSASLR 127          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_AGRT5 (Peptide methionine sulfoxide reductase msrB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=msrB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.461e-36
Identity = 67/123 (54.47%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKP 503
            SD +W+ +LT EQY+I R+ GTER FTG YWN+   G Y C  CD PLF S TKFD+G GWPSY++P+     ++   S   M R E+ CA C  HLGHVF DGPPPTG RYCIN  S+  +P
Sbjct:   12 SDADWREQLTPEQYHILREHGTERPFTGPYWNSTEKGLYRCAACDEPLFLSDTKFDAGCGWPSYFEPVKPGAVTEHRDSTHGMVRTEIRCANCGGHLGHVFPDGPPPTGLRYCINGHSMVFEP 134          
The following BLAST results are available for this feature:
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
MSRB_THISH4.089e-3757.72Peptide methionine sulfoxide reductase msrB OS=Thi... [more]
MSRB2_RAT1.190e-3651.88Methionine-R-sulfoxide reductase B2, mitochondrial... [more]
MSRB_RALSO2.029e-3656.67Peptide methionine sulfoxide reductase msrB OS=Ral... [more]
MSRB_CELJU2.029e-3657.48Peptide methionine sulfoxide reductase msrB OS=Cel... [more]
MSRB_SYNR32.650e-3653.49Peptide methionine sulfoxide reductase msrB OS=Syn... [more]
MSRB_PSEPK2.650e-3654.92Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_LEPIN2.650e-3657.38Peptide methionine sulfoxide reductase msrB OS=Lep... [more]
MSRB_LEPIC2.650e-3657.38Peptide methionine sulfoxide reductase msrB OS=Lep... [more]
MSRB_HERAR2.650e-3657.02Peptide methionine sulfoxide reductase msrB OS=Her... [more]
MSRB_AGRT53.461e-3654.47Peptide methionine sulfoxide reductase msrB OS=Agr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01387 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01387 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624296 ID=BQ624296; Name=BQ624296; organism=Citrus sinensis; type=EST; length=617bp
TTGTTTCAGCTTCTCCTTCTTTAAGACGGCCCAAAAGAGTTTCCTTGTCA
GTAATTCGCGCCATGGGCTCCTCTGCTTCTTCACAGAAACCCGACAACAT
TCAAGAGGCCAACAGGGTTGATTATGCTTCTATAAGTGATGAAGAGTGGA
AAAGAAGGCTCACAGGGGAGCAATATTACATAACTCGACAAAAAGGGACT
GAGAGGGCTTTTACGGGGGAATATTGGAACACCAAAACCCCTGGTACCTA
CCATTGCATTTGTTGTGACACACCTTTATTCGAATCATCAACCAAATTTG
ACAGTGGTACTGGTTGGCCATCATATTATCAGCCCATAGGAAGCAACATG
AAGTCAAAGTTGGATTTGTCAATTATTTTCATGCCTCGCCAGGAGGTCCT
TTGTGCCGTATGTGATGCTCATCTTGGCCATGTCTTTGATGATGGCCCAC
CACCCACAGGAAAGCGTTACTGTATCAACAGTGCTTCCTTAAAACTGAAG
CCAAAATAGGTATGAATATCAAGCCAGAATACCAGAATGAGCTACATGTA
ATGAACTTCTACTGTTTACACTTGGTAATCAATTTTTCTCTGGGAACTAC
ACTTCTATGACAAATTT
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