BQ624296

Overview
NameBQ624296
Unique NameBQ624296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALTI (Peptide methionine sulfoxide reductase msrB OS=Salmonella typhi GN=msrB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ CDTPLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALSV (Peptide methionine sulfoxide reductase msrB OS=Salmonella schwarzengrund (strain CVM19633) GN=msrB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ CDTPLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALPB (Peptide methionine sulfoxide reductase msrB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ CDTPLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALNS (Peptide methionine sulfoxide reductase msrB OS=Salmonella newport (strain SL254) GN=msrB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ CDTPLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALHS (Peptide methionine sulfoxide reductase msrB OS=Salmonella heidelberg (strain SL476) GN=msrB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ CDTPLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALDC (Peptide methionine sulfoxide reductase msrB OS=Salmonella dublin (strain CT_02021853) GN=msrB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ CDTPLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALA4 (Peptide methionine sulfoxide reductase msrB OS=Salmonella agona (strain SL483) GN=msrB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.899e-34
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDMPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SALAR (Peptide methionine sulfoxide reductase msrB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.481e-34
Identity = 64/120 (53.33%), Postives = 82/120 (68.33%), Query Frame = 3
Query:  132 ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            +S EE K++L+  Q+Y+T+ +GTE  FTG   + K  G YHC+ C+ PLF S TK+DSG GWPS+YQP+       +D     M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    5 LSAEELKKKLSEMQFYVTQNRGTEPPFTGRLLHNKRDGVYHCLVCEAPLFHSHTKYDSGCGWPSFYQPVSKEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_METMA (Peptide methionine sulfoxide reductase msrB OS=Methanosarcina mazei GN=msrB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.526e-34
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S+E+WK  LT EQY++ RQKGTER F+G  +  K  G Y C  C   LF S TKF+SGTGWPS+Y  I S+     + +  FM R EV+C+ C +HLGHVF+DGP PTG+RYCINS SL
Sbjct:    9 SEEDWKSVLTPEQYHVLRQKGTERPFSGNLYYNKEKGIYTCAACGQELFSSDTKFESGTGWPSFYDVISSDRVRLHEDNSYFMKRIEVVCSRCGSHLGHVFEDGPEPTGQRYCINSVSL 127          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_METPP (Peptide methionine sulfoxide reductase msrB OS=Methylibium petroleiphilum (strain PM1) GN=msrB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.231e-33
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 3
Query:   72 SASSQKPDNIQEANRVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            S++  KP  +Q+         ++ EW+ +L   Q+ +TR   TERAFTG+Y +    G YHC+ C+ PLF+S TKFD+G GWPSY+QP+   +  ++      M R EV C  C AHLGHVF DGP PTG+RYCINSASL  +P+
Sbjct:    2 SSTDDKPRKVQK---------TEAEWRAQLDPMQFEVTRHGATERAFTGKYADHWQEGVYHCVGCNAPLFDSGTKFDAGCGWPSYFQPLRGEIIDRVVDRSHGMVRVEVRCQDCGAHLGHVFPDGPEPTGERYCINSASLGFEPR 137          
The following BLAST results are available for this feature:
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
MSRB_SALTI3.827e-3555.46Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALSV3.827e-3555.46Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALPB3.827e-3555.46Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALNS3.827e-3555.46Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALHS3.827e-3555.46Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALDC3.827e-3555.46Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALA41.899e-3454.62Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SALAR2.481e-3453.33Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_METMA5.526e-3455.46Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_METPP1.231e-3346.90Peptide methionine sulfoxide reductase msrB OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01387 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01387 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624296 ID=BQ624296; Name=BQ624296; organism=Citrus sinensis; type=EST; length=617bp
TTGTTTCAGCTTCTCCTTCTTTAAGACGGCCCAAAAGAGTTTCCTTGTCA
GTAATTCGCGCCATGGGCTCCTCTGCTTCTTCACAGAAACCCGACAACAT
TCAAGAGGCCAACAGGGTTGATTATGCTTCTATAAGTGATGAAGAGTGGA
AAAGAAGGCTCACAGGGGAGCAATATTACATAACTCGACAAAAAGGGACT
GAGAGGGCTTTTACGGGGGAATATTGGAACACCAAAACCCCTGGTACCTA
CCATTGCATTTGTTGTGACACACCTTTATTCGAATCATCAACCAAATTTG
ACAGTGGTACTGGTTGGCCATCATATTATCAGCCCATAGGAAGCAACATG
AAGTCAAAGTTGGATTTGTCAATTATTTTCATGCCTCGCCAGGAGGTCCT
TTGTGCCGTATGTGATGCTCATCTTGGCCATGTCTTTGATGATGGCCCAC
CACCCACAGGAAAGCGTTACTGTATCAACAGTGCTTCCTTAAAACTGAAG
CCAAAATAGGTATGAATATCAAGCCAGAATACCAGAATGAGCTACATGTA
ATGAACTTCTACTGTTTACACTTGGTAATCAATTTTTCTCTGGGAACTAC
ACTTCTATGACAAATTT
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