BQ624296

Overview
NameBQ624296
Unique NameBQ624296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_ECO27 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.582e-33
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            S EE K+ L+  Q+Y+T+  GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+Y+P+   +++   DLS   M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL+
Sbjct:    6 SAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLS-HGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLR 125          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_ECO24 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.582e-33
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            S EE K+ L+  Q+Y+T+  GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+Y+P+   +++   DLS   M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL+
Sbjct:    6 SAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLS-HGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLR 125          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_TERTT (Peptide methionine sulfoxide reductase msrB OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=msrB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.678e-33
Identity = 60/127 (47.24%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  120 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 500
            D+    D+ W+ +LT E++ I R+KGTE  F+G+Y +T   GTY C CC+TPLF+S  KFD+G GWPS+++P+   + ++   + + M R E++C  C  HLGHVF DGP PTG RYC+NSAS++ +
Sbjct:    3 DHNLKDDDYWRSKLTDEEFRICREKGTEMPFSGKYVDTTEAGTYLCRCCNTPLFKSLAKFDAGCGWPSFFEPLEKGVITEEMDTSLGMVRTEIMCEACGCHLGHVFTDGPQPTGLRYCVNSASIQFE 129          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_ECO81 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O81 (strain ED1a) GN=msrB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.678e-33
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            S EE K+ L+  Q+Y+T+  GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+Y+P+   +++   DLS   M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL+
Sbjct:    6 SAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLS-HGMQRIEIRCGNCDAHLGHVFPDGPHPTGERYCVNSASLR 125          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_ECO45 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.678e-33
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            S EE K+ L+  Q+Y+T+  GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+Y+P+   +++   DLS   M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL+
Sbjct:    6 SAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPLSEESIRYIKDLS-HGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLR 125          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_CHRSD (Peptide methionine sulfoxide reductase msrB OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msrB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.678e-33
Identity = 68/125 (54.40%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKP 503
            S+ EW+++LT EQY +TR+KGTER FTG+Y  +   G YHC+CC  PLFE+  KFD+G GWPS+ +P+  ++++  LD S   M R EV C  CD+HLGHVF DGP   TG RYCINS SL   P
Sbjct:    8 SEHEWQQQLTPEQYRVTREKGTERPFTGDYQVSDEQGIYHCVCCGAPLFENEHKFDAGCGWPSFDRPLADASIEEHLDTS-HGMRRIEVTCRRCDSHLGHVFPDGPQDTTGLRYCINSVSLDFHP 131          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_SHIDS (Peptide methionine sulfoxide reductase msrB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msrB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.980e-33
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            S EE K+ L+  Q+Y+T+  GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+Y+P+   +++   DLS   + R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL+
Sbjct:    6 SAEELKKNLSDMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLS-HGVQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLR 125          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_KLEP7 (Peptide methionine sulfoxide reductase msrB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=msrB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.042e-32
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  141 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            EE K  L+  Q+Y+T+  GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+Y+P+ +     L  +   M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    8 EELKNGLSEMQFYVTQHHGTEPPFTGRLLHNKKNGVYHCLVCDAPLFNSQTKYDSGCGWPSFYEPVSAEAIRYLTDNSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_KLEP3 (Peptide methionine sulfoxide reductase msrB OS=Klebsiella pneumoniae (strain 342) GN=msrB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.960e-32
Identity = 63/119 (52.94%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S  E K  L+  Q+Y+T+  GTE  FTG   + K  G YHC+ CD PLF S TK+DSG GWPS+Y+P+       L  +   M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SPGELKNGLSEMQFYVTQHHGTEPPFTGRLLHNKKNGVYHCLVCDAPLFNSQTKYDSGCGWPSFYEPVSDEAIRYLTDNSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASL 124          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_ESCF3 (Peptide methionine sulfoxide reductase msrB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.152e-31
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASL 491
            S ++ K  L+  Q+Y+T++ GTE  +TG   + K  G Y C+ CDTPLF S +K+DSG GWPS+Y+P+  N    L      M R E+ C  CDAHLGHVF DGP PTG+RYC+NSASL
Sbjct:    6 SVDDLKENLSEMQFYVTQKHGTEPPYTGRLLHNKRDGVYRCLVCDTPLFNSQSKYDSGCGWPSFYEPVNENSIRYLTDLSHGMERIEIRCGHCDAHLGHVFPDGPQPTGERYCVNSASL 124          
The following BLAST results are available for this feature:
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
MSRB_ECO273.582e-3354.55Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO243.582e-3354.55Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_TERTT4.678e-3347.24Peptide methionine sulfoxide reductase msrB OS=Ter... [more]
MSRB_ECO814.678e-3354.55Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_ECO454.678e-3354.55Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_CHRSD4.678e-3354.40Peptide methionine sulfoxide reductase msrB OS=Chr... [more]
MSRB_SHIDS7.980e-3353.72Peptide methionine sulfoxide reductase msrB OS=Shi... [more]
MSRB_KLEP71.042e-3253.85Peptide methionine sulfoxide reductase msrB OS=Kle... [more]
MSRB_KLEP33.960e-3252.94Peptide methionine sulfoxide reductase msrB OS=Kle... [more]
MSRB_ESCF31.152e-3151.26Peptide methionine sulfoxide reductase msrB OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01387 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01387 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624296 ID=BQ624296; Name=BQ624296; organism=Citrus sinensis; type=EST; length=617bp
TTGTTTCAGCTTCTCCTTCTTTAAGACGGCCCAAAAGAGTTTCCTTGTCA
GTAATTCGCGCCATGGGCTCCTCTGCTTCTTCACAGAAACCCGACAACAT
TCAAGAGGCCAACAGGGTTGATTATGCTTCTATAAGTGATGAAGAGTGGA
AAAGAAGGCTCACAGGGGAGCAATATTACATAACTCGACAAAAAGGGACT
GAGAGGGCTTTTACGGGGGAATATTGGAACACCAAAACCCCTGGTACCTA
CCATTGCATTTGTTGTGACACACCTTTATTCGAATCATCAACCAAATTTG
ACAGTGGTACTGGTTGGCCATCATATTATCAGCCCATAGGAAGCAACATG
AAGTCAAAGTTGGATTTGTCAATTATTTTCATGCCTCGCCAGGAGGTCCT
TTGTGCCGTATGTGATGCTCATCTTGGCCATGTCTTTGATGATGGCCCAC
CACCCACAGGAAAGCGTTACTGTATCAACAGTGCTTCCTTAAAACTGAAG
CCAAAATAGGTATGAATATCAAGCCAGAATACCAGAATGAGCTACATGTA
ATGAACTTCTACTGTTTACACTTGGTAATCAATTTTTCTCTGGGAACTAC
ACTTCTATGACAAATTT
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