C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.614e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HI+IVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A1_PONAB7.361e-2282.76Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]
EF1A1_PANTR7.361e-2282.76Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE7.361e-2282.76Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN7.361e-2282.76Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_HORSE7.361e-2282.76Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A1_FELCA7.361e-2282.76Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR7.361e-2282.76Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN7.361e-2282.76Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A0_XENLA7.361e-2282.76Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_SOLLC9.614e-2284.48Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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