C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.275e-20
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE KTHIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.275e-20
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE KTHIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.275e-20
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 3
Query:   78 MGK-EKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGK +KTHINIVVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  M KG FKYAW
Sbjct:    1 MGKGDKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.535e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE KTHIN+VVIGHVDSGKSTTTGH IY+ GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYQCGGIDKRTIEKFEKEAAELGKGSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.535e-19
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK H+N+VVIGHVDSGKSTTTGH IYKLGGI  R I +FEKE++ M K  FKYAW
Sbjct:    1 MGKEKEHLNLVVIGHVDSGKSTTTGHLIYKLGGIDARTIEKFEKESAEMGKASFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.005e-19
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            M KEK H+N+VVIGHVDSGKST+TGH IYK GGI KR I +FEKEA+ M KG FKYAW
Sbjct:    1 MPKEKNHLNLVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.005e-19
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE K HIN+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEDKAHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAW 59          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.005e-19
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGK+K H+N+VVIGHVDSGKSTTTGH IYK GGI KR I +FEKEA  + K  FKYAW
Sbjct:    1 MGKDKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQELGKSSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.618e-19
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHIN+VVIGHVD+GKSTTTGH IYKLGGI  R I +FE +A  M K  FKYAW
Sbjct:    1 MGKEKTHINLVVIGHVDAGKSTTTGHLIYKLGGIDARTIAKFEADAKEMGKSSFKYAW 58          
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.833e-19
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 3
Query:   78 MGKE-KTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKE K HINIVVIGHVDSGKSTTTGH IYK GGI +R I +FEKEA+ + KG FKYAW
Sbjct:    1 MGKEDKQHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKEAAELGKGSFKYAW 59          
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_PODAN5.275e-2077.97Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_NEUCR5.275e-2077.97Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A3_OSCTI5.275e-2079.66Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_TRIRE1.535e-1976.27Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A1_EUPCR1.535e-1974.14Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_STYLE2.005e-1974.14Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_SORMA2.005e-1976.27Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_CRYNE2.005e-1972.41Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1AS_PORPU2.618e-1974.14Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_ASPOR5.833e-1976.27Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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