C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.197e-34
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:   64 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K+KIGINGFGRIGRLVARV L+RDDVELVAVNDPFITTDYMTYMFKYDS HGQWK+ EL VKD  TLLFG+KPVTVF  R
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHR 83          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.498e-32
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 1
Query:   91 GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            GRIGRLVARV LQRDDVELVAVNDPFI+TDYMTYMFKYDS HGQWKHHELKVKD+KTLLFGEK V VFG+R
Sbjct:    1 GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIR 71          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   64 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K+K+GINGFGRIGRLVARV L+RDD+ELVA+NDPFIT +YMTYMFKYDS HGQWK  E+ +  +  L FG  PV V+  R
Sbjct:    6 KIKVGINGFGRIGRLVARVALERDDIELVAINDPFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACR 85          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.359e-22
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:  154 VNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            VNDPFITTDYMTYMFKYD+ HGQWKHHE+KVKD KTLLFGEK V VFG R
Sbjct:    1 VNDPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCR 50          

HSP 2 Score: 26.9498 bits (58), Expect = 3.359e-22
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  291 FRC*DPEEXHWAXT*AEYVV 350
            F C +PEE  WA   AEYVV
Sbjct:   47 FGCRNPEEIPWAAAGAEYVV 66          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVRTQRS 315
            VK+GINGFGRIGRLV R  L+   VE+VAVNDPFI  DYM YMFK+DS HG++K   ++ KD K ++ G KP+ VFG R   S
Sbjct:    3 VKVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFIPLDYMVYMFKFDSVHGRYK-GTVEAKDGKLIIAG-KPIAVFGERDPAS 83          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.960e-19
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   70 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K+GINGFGRIGR+V R  L+  D+++VA+NDPFI  DYM YMFKYDS HG++K  +++ KD K ++ G KP++VFG R
Sbjct:    4 KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFK-GKVETKDGKLVIEG-KPISVFGER 79          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.448e-19
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVRTQRS 315
            + IGINGFGRIGRLV R+ LQR D+++VAVNDPFI  +Y  YMFKYDS HG++K  E+  KDD  ++ G+  + VFG +   S
Sbjct:    3 ITIGINGFGRIGRLVLRIALQRSDIKVVAVNDPFIAPEYAAYMFKYDSTHGRYK-GEVTSKDDSLVIDGQS-IKVFGEKDPAS 83          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.161e-18
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHH 234
            M K KIGINGFGRIGRLV R  +++D VE+VAVNDPFI  DYM YMFKYDS HG++K H
Sbjct:    1 MSKPKIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFINIDYMVYMFKYDSTHGRFKGH 59          

HSP 2 Score: 21.1718 bits (43), Expect = 1.161e-18
Identity = 9/16 (56.25%), Postives = 9/16 (56.25%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  W    AEYVV
Sbjct:   85 DPAEIPWGVEGAEYVV 100          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFG 297
            VK+GINGFGRIGR+V R  ++  D+E+VAVNDPFI  DYM YMFKYDS HG++K   ++VKD K L    K + VFG
Sbjct:    3 VKVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFK-GSVEVKDGK-LYINNKAIAVFG 77          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.167e-18
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            MGKVK+GINGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G  P+T+F  R
Sbjct:    1 MGKVKVGINGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-NPITIFQER 80          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3PC_PEA8.197e-3485.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC4.498e-3290.14Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA7.431e-2767.50Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU3.359e-2286.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_OMPOL1.501e-1959.04Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_CRYCU1.960e-1957.69Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_DEBHA7.448e-1955.42Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_ONCVO1.161e-1871.19Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_CRYNE1.270e-1859.74Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_PONAB2.167e-1853.66Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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