C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.649e-16
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG++        DDK ++   K +  +  R
Sbjct:    2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGE--VSHDDKHIIVDGKKIATYQER 78          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            VK+GINGFGRIGR+V R  ++ DDVE+VAVNDPFI T Y  YM KYDS HGQ+K
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFK 56          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFG 297
            V +GINGFGRIGR+V R  L    +++VA+NDPFI  +YM YMFKYDS HG++K   ++ KD K  + G KPV V+G
Sbjct:    2 VNVGINGFGRIGRIVFRNALLNPKIQVVAINDPFINLEYMVYMFKYDSVHGRFK-GTVEAKDGKLWIQG-KPVIVYG 76          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVT 288
            V++ INGFGRIGRLV R+ LQR +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+   D   ++ G K  T
Sbjct:    2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYA-GEVSHDDKHIIVDGHKIAT 74          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   67 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            ++I INGFGRIGRLV R+ LQR D+E+VAVNDPFI+ DY  YM KYDS HG++K
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHGRYK 55          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.735e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K
Sbjct:    1 MSKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFK 57          

HSP 2 Score: 21.1718 bits (43), Expect = 3.735e-16
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  W    A+YVV
Sbjct:   86 DPAEIQWGSAGADYVV 101          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.855e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K
Sbjct:    1 MSKPTVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFK 57          

HSP 2 Score: 21.1718 bits (43), Expect = 4.855e-16
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  W    A+YVV
Sbjct:   86 DPAEIQWGAAGADYVV 101          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.855e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K
Sbjct:    1 MTKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFK 57          

HSP 2 Score: 21.557 bits (44), Expect = 4.855e-16
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  W  + A+YVV
Sbjct:   86 DPAEIQWGASGADYVV 101          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.855e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWK 228
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K
Sbjct:    1 MPKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFK 57          

HSP 2 Score: 21.557 bits (44), Expect = 4.855e-16
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            DP E  W  + A+YVV
Sbjct:   86 DPAEIQWGASGADYVV 101          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.862e-16
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQW 225
            M K K+GINGFGRIGRL  R  +++D V++VA+NDPFI  DYM YMF YDS HG++
Sbjct:    1 MVKPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRF 56          

HSP 2 Score: 23.483 bits (49), Expect = 4.862e-16
Identity = 10/20 (50.00%), Postives = 11/20 (55.00%), Query Frame = 3
Query:  291 FRC*DPEEXHWAXT*AEYVV 350
            F   DP E  WA   AEYV+
Sbjct:   82 FNLKDPAEIKWAEVGAEYVI 101          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3P3_YEAST2.649e-1651.90Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P_PARBA3.460e-1670.37Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_LYOSH3.460e-1654.55Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P2_YEAST3.460e-1655.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P1_YEAST3.460e-1668.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P3_CAEBR3.735e-1663.16Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEBR4.855e-1663.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P3_CAEEL4.855e-1663.16Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL4.855e-1663.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P1_GLORO4.862e-1662.50Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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