C21840

Overview
NameC21840
Unique NameC21840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4907 contig Csv1_Contig4907:644..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.612e-37
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KELEVEKFITH+VPF+EINKA
Sbjct:  204 AMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKA 288
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.612e-37
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KELEVEKFITH+VPF+EINKA
Sbjct:  277 AMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.717e-37
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MIS F C HDGWGVAVLVGVP KDD FKTHPMN LNE+TLKGTFFGNYKPR+DLP+VVE YM KELE+EKFITH+VPFSEIN A
Sbjct:  277 AMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.717e-37
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MIS F C HDGWGVAVLVGVP KDD FKTHPMN LNE+TLKGTFFGNYKPR+DLP+VVE YM KELE+EKFITH+VPFSEIN A
Sbjct:  277 AMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.717e-37
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP+KDD FKTHPMN L+E+TLKGTFFGNYKPR+DLP+VVE YM KELE+EKFITH+VPFSEIN A
Sbjct:  277 AMISAFECVHDGWGVAVLVGVPHKDDQFKTHPMNFLSEKTLKGTFFGNYKPRTDLPNVVEMYMKKELELEKFITHSVPFSEINTA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.717e-37
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KD  FKTHPMN LNERTLKGTFFGN+KPR+DLP+VVE YM KELEVEKFITH+VPFSEINKA
Sbjct:  277 AMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINKA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 8.046e-37
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KELEVEKFITH+VPFSEIN A
Sbjct:  277 AMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.046e-37
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KELEVEKFITH+VPFSEIN A
Sbjct:  277 AMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.793e-36
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KD  FKTHPMN LNERTLKGTFFGN+KPR+DLP+VVE YM KELEVEKFITH+VPFSEIN A
Sbjct:  277 AMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVEMYMKKELEVEKFITHSVPFSEINTA 361
[Close]
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.836e-35
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI+ F C HDGWGVAVLVGVP+K+  FKTHPMN LNE+TLKGTFFGNYKPR+DLP VVE YM KEL++EKFITH+VPFS+IN A
Sbjct:  277 AMIATFECVHDGWGVAVLVGVPHKEAVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPEVVEMYMRKELDLEKFITHSVPFSQINTA 361
The following BLAST results are available for this feature:
BLAST of C21840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ADH1_ZEALU3.612e-3783.53Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian... [more]
ADH1_MAIZE3.612e-3783.53Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
ADH2_ORYSJ4.717e-3782.35Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI4.717e-3782.35Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
ADH2_MAIZE4.717e-3782.35Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADH1_PENAM4.717e-3783.53Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADH1_ORYSJ8.046e-3783.53Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI8.046e-3783.53Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADH1_HORVU1.793e-3682.35Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
ADH3_HORVU9.836e-3576.47Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]

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Properties
Property NameValue
Genbank descriptionC21840 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-21R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21840 ID=C21840; Name=C21840; organism=Citrus sinensis; type=EST; length=261bp
GGCACGAGCATGATTTCAGCATTTNANTGCNTTCACGATGGTTGGGGTGT
TGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATC
CCATGAATCTCCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAAC
TACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAA
GGAGTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGA
TAAACAAGGCA
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