C21840

Overview
NameC21840
Unique NameC21840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4907 contig Csv1_Contig4907:644..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +MISAF   H   G +V+VGVP        +P+ L   RT KG  FG +K +  +P +V  +M K+  ++  ITHT+PF +IN+
Sbjct:  275 TMISAFTSCHQNLGTSVVVGVPPNASMITYNPLMLFTGRTWKGCVFGGWKSKDSVPKLVSDFMQKKFVLDPLITHTLPFEKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 MISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            M +A    H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  ++++E F+THT+   EIN A
Sbjct:  270 MRAALESAHRGWGQSVIIGVAVAGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDA 353          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M +A    H  +GV+V+VGVP   +     PM L + RT KG+ FG +K +  +P +V  YM K+  ++  ITHT+PF +IN+
Sbjct:  274 TMAAALASCHFNYGVSVIVGVPPAAEKLSFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMEKKFVLDPLITHTLPFHKINE 357          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M +A    H+ +GV+V+VGVP         PM + + RT KG+ FG +K +  +P +V  YM K+  ++  ITHT+PF++IN+
Sbjct:  276 TMTAALASCHNNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINE 359          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  ++  ITH +PF +IN+
Sbjct:  275 TMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.358e-12
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  ++  ITH +PF +IN+
Sbjct:  275 TMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.079e-12
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+ A    H  +G +V+VG P         PM L   RT KG  FG +K R D+P +V +++ K+ ++++ ITHT+PF+ IN+
Sbjct:  274 TMVDALSSCHMNYGTSVVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTLPFNNINE 357          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.252e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M +A    H  +GV+V++GVP   +     PM L + RT KG+ FG +K +  +P +V  YM K+  +E  ITHT+PF +IN+
Sbjct:  275 TMAAALASCHFNYGVSVILGVPPAAEKISFDPMLLFSGRTWKGSVFGGWKSKDAVPKLVADYMEKKFVLEPLITHTLPFIKINE 358          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +M SA    H   GV+V+VGVP        +PM LL  RT KG  FG +K +  +P +V  +M K+  ++  ITH +PF +IN+A
Sbjct:  275 TMTSALLSCHAACGVSVVVGVPPNAQNLSMNPMLLLLGRTWKGAIFGGFKSKDSVPKLVADFMAKKFPLDPLITHVLPFEKINEA 359          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINK 258
            +M+++  C H+  G +V+VGVP        +PM LL  RT KG  FG +K +  +P +V  +M K+  ++  IT+ +PF +IN+
Sbjct:  275 TMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINE 358          
The following BLAST results are available for this feature:
BLAST of C21840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ADH1_NAJNA1.805e-1239.29Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
FRMA_ECOLI2.358e-1240.48S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1_STRCA2.358e-1239.29Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_CHICK2.358e-1238.10Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1B_PANTR2.358e-1235.71Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN2.358e-1235.71Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH7_MOUSE3.079e-1236.90Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH1_APTAU5.252e-1239.29Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADH1_MOUSE6.859e-1240.00Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1G_HUMAN6.859e-1235.71Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]

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Properties
Property NameValue
Genbank descriptionC21840 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-21R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21840 ID=C21840; Name=C21840; organism=Citrus sinensis; type=EST; length=261bp
GGCACGAGCATGATTTCAGCATTTNANTGCNTTCACGATGGTTGGGGTGT
TGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATC
CCATGAATCTCCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAAC
TACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAA
GGAGTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGA
TAAACAAGGCA
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