C21841

Overview
NameC21841
Unique NameC21841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECOBW (Malate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO8A (Malate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO81 (Malate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO7I (Malate dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO5E (Malate dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO57 (Malate dehydrogenase OS=Escherichia coli O157:H7 GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO55 (Malate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO45 (Malate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO27 (Malate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDH_ECO24 (Malate dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH+ T V ++GF G+     AL G D+V+I AGV RKPGM R DL N+NAGIV  L + +AK CPK  +  I
Sbjct:   46 LSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of C21841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_ECOBW1.632e-1350.68Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECO8A1.632e-1350.68Malate dehydrogenase OS=Escherichia coli O8 (strai... [more]
MDH_ECO811.632e-1350.68Malate dehydrogenase OS=Escherichia coli O81 (stra... [more]
MDH_ECO7I1.632e-1350.68Malate dehydrogenase OS=Escherichia coli O7:K1 (st... [more]
MDH_ECO5E1.632e-1350.68Malate dehydrogenase OS=Escherichia coli O157:H7 (... [more]
MDH_ECO571.632e-1350.68Malate dehydrogenase OS=Escherichia coli O157:H7 G... [more]
MDH_ECO551.632e-1350.68Malate dehydrogenase OS=Escherichia coli (strain 5... [more]
MDH_ECO451.632e-1350.68Malate dehydrogenase OS=Escherichia coli O45:K1 (s... [more]
MDH_ECO271.632e-1350.68Malate dehydrogenase OS=Escherichia coli O127:H6 (... [more]
MDH_ECO241.632e-1350.68Malate dehydrogenase OS=Escherichia coli O139:H28 ... [more]

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Properties
Property NameValue
Genbank descriptionC21841 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSP-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21841 ID=C21841; Name=C21841; organism=Citrus sinensis; type=EST; length=229bp
GGCANGAGTATCAGTCACATGGATACAAATGTTGTGGTACGAGGATTTNT
GGGGCAACAGCAATTGGNGGATGCCCTCACGGGCATGGACATTGTAATCA
TTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGNTC
AATATCAATGCCGGAATTGTTANGACCCTTTGTGAAGGAATAGCTAAGTG
CTGTCCAAAAGNTATTGTGAACTCGATTA
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