C21855

Overview
NameC21855
Unique NameC21855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9307 contig Csv1_Contig9307:31..290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14332_ORYSJ (14-3-3-like protein GF14-B OS=Oryza sativa subsp. japonica GN=GF14B PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.996e-15
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +RE+ VY+AKLAEQAERYEEMV+FM+  V  +  + ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    8 SREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVIGARRA 65          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14332_MAIZE (14-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.996e-15
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +RE+ VY+AKLAEQAERYEEMV+FM+  V  +  + ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    7 SREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVIGARRA 64          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14331_MAIZE (14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.996e-15
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +RE+ VY+AKLAEQAERYEEMV+FM+  V  +  + ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    7 SREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVIGARRA 64          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14333_ARATH (14-3-3-like protein GF14 psi OS=Arabidopsis thaliana GN=GRF3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.912e-15
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            TRE+ VY+AKLAEQAERYEEMV+FM+  V  +    EL+VEERNLLSVAYKNVIG+ RA
Sbjct:    3 TREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDVEELSVEERNLLSVAYKNVIGARRA 60          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433_MESCR (14-3-3-like protein OS=Mesembryanthemum crystallinum GN=GBF PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.110e-15
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +RE+ VY+AKLAEQAERYEEMV+FM+  V   T   EL+VEERNLLSVAYKNVIG+ RA
Sbjct:    6 SREENVYMAKLAEQAERYEEMVEFMEK-VAKMTDTEELSVEERNLLSVAYKNVIGARRA 63          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433A_TOBAC (14-3-3-like protein A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.110e-15
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            M +P RE+ VYLAKLAEQAERYEEMV+FM+ +V +     ELT+EERNLLSVAYKNVIG+ RA
Sbjct:    1 MASP-REENVYLAKLAEQAERYEEMVEFMEKVVGAGD--DELTIEERNLLSVAYKNVIGARRA 60          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433A_SOYBN (14-3-3-like protein A OS=Glycine max GN=GF14A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.716e-15
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            M   +RE+ VY+AKLA++AERYEEMV+FM+  V  +    ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    1 MSDSSREENVYMAKLADEAERYEEMVEFMEK-VAKTVEVEELTVEERNLLSVAYKNVIGARRA 62          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14333_ORYSJ (14-3-3-like protein GF14-C OS=Oryza sativa subsp. japonica GN=GF14C PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.716e-15
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +RE+ VY+AKLAEQAERYEEMV++M+  V  +    ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    2 SREENVYMAKLAEQAERYEEMVEYMEK-VAKTVDVEELTVEERNLLSVAYKNVIGARRA 59          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14331_SOLTU (14-3-3-like protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.138e-14
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +RE+ VY+AKLAEQAERYEEMV+FM+ +  +     ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 SREENVYMAKLAEQAERYEEMVEFMEKV--AKVDVEELTVEERNLLSVAYKNVIGARRA 60          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: RAD24_SCHPO (DNA damage checkpoint protein rad24 OS=Schizosaccharomyces pombe GN=rad24 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.326e-14
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            M T +RE  VYLAKLAEQAERYE MV+ M S+ ++     ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    1 MSTTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQ---ELTVEERNLLSVAYKNVIGARRA 60          
The following BLAST results are available for this feature:
BLAST of C21855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
14332_ORYSJ2.996e-1571.1914-3-3-like protein GF14-B OS=Oryza sativa subsp. ... [more]
14332_MAIZE2.996e-1571.1914-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE... [more]
14331_MAIZE2.996e-1571.1914-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=... [more]
14333_ARATH3.912e-1571.1914-3-3-like protein GF14 psi OS=Arabidopsis thalia... [more]
1433_MESCR5.110e-1571.1914-3-3-like protein OS=Mesembryanthemum crystallin... [more]
1433A_TOBAC5.110e-1569.8414-3-3-like protein A OS=Nicotiana tabacum PE=2 SV... [more]
1433A_SOYBN8.716e-1565.0814-3-3-like protein A OS=Glycine max GN=GF14A PE=2... [more]
14333_ORYSJ8.716e-1569.4914-3-3-like protein GF14-C OS=Oryza sativa subsp. ... [more]
14331_SOLTU1.138e-1469.4914-3-3-like protein OS=Solanum tuberosum PE=2 SV=1[more]
RAD24_SCHPO4.326e-1468.25DNA damage checkpoint protein rad24 OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionC21855 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-33R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21855 ID=C21855; Name=C21855; organism=Citrus sinensis; type=EST; length=259bp
GGCACGANTCCAGTTAACTTTACAGTTTCTGCAATTNTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCCGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAAGTTCATGGACAGCCTCGTCACTTCCTCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTCCTCTCCGTTGCT
TACAAGAACGTCATCGGCTCTNTTCGCGCCGGTGGNGTATTATCTCCTCT
ATCGAGCAG
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