C21901

Overview
NameC21901
Unique NameC21901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length260
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.089e-25
Identity = 47/63 (74.60%), Postives = 57/63 (90.48%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA++R  KELK+LQ+DPP SCSAGP  +DMFHWQATIMGP++SP++GGVF V+IHFPPDYPFK
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.579e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR  KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.063e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL+DL +DPPA CSAGPV DD+FHWQATIMGP DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.063e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR +KEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.063e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR +KEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
The following BLAST results are available for this feature:
BLAST of C21901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UB2D3_PONAB5.428e-2577.78Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE5.428e-2577.78Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA5.428e-2577.78Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN5.428e-2577.78Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D3_BOVIN5.428e-2577.78Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC29_ARATH7.089e-2574.60Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UB2D4_HUMAN1.579e-2476.19Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBCD1_DROME2.063e-2476.19Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D2_XENLA2.063e-2476.19Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT2.063e-2476.19Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC21901 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSO-3R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21901 ID=C21901; Name=C21901; organism=Citrus sinensis; type=EST; length=260bp
GGCACGAGAAATAACACCAGACCCAAACTNTCAGGCCACAAAGTTTGTTG
AGAAATTCCCAGATGGCTTCAAAACGGNTCAACAAGGAGTTGAAGGACCT
ACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACA
TGTTCCATTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCT
GGGGGTGTATTTNTTGTATCCATTCATTTCCCACCTGATTATCCATTCAA
GCACCGAGGC
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