C21901

Overview
NameC21901
Unique NameC21901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length260
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.979e-23
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR  KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFK
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.979e-23
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR  KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFK
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.336e-22
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR +KEL DL +DPPA CSAGPV +DMFHWQATIMGP+DSP+ GG F ++I FP +YPFK
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.336e-22
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR +KEL DL +DPPA CSAGPV +DMFHWQATIMGP+DSP+ GG F ++I FP +YPFK
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.251e-21
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR ++EL+D+Q+ PPA+CSAGPVA+ D+FHWQATIMGP DSP++GGVF VSI F  DYPFK
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFK 64          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.026e-15
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            + KR  +E+ +L  DPP  CSAGP  D+++HW ATI+GPS +P+ GG+F + I FP DYPFK
Sbjct:   37 SGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFK 98          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.899e-15
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   42 SLLRNSQMAS---KRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            S+ +NS++ S   KR  KEL D+  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F P+YPFK
Sbjct:   37 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 109          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.899e-15
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   42 SLLRNSQMAS---KRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            S+ +NS++ S   KR  KEL D+  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F P+YPFK
Sbjct:   37 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 109          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.651e-15
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            ++KR  KEL ++  DPP +CSAGP  D+++ W +TI+GP  S + GGVF + IHF P+YPFK
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFK 148          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.935e-14
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            ++KR  KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F PDYPFK
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 117          
The following BLAST results are available for this feature:
BLAST of C21901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UB2D1_HUMAN2.979e-2373.02Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN2.979e-2373.02Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
U2D2B_RAT7.336e-2269.84Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE7.336e-2269.84Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC12_ARATH1.251e-2171.88Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
COP10_ARATH1.026e-1553.23Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UB2E1_MOUSE3.899e-1549.32Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN3.899e-1549.32Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBCD2_DROME6.651e-1551.61Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E2_MOUSE1.935e-1451.61Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC21901 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSO-3R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21901 ID=C21901; Name=C21901; organism=Citrus sinensis; type=EST; length=260bp
GGCACGAGAAATAACACCAGACCCAAACTNTCAGGCCACAAAGTTTGTTG
AGAAATTCCCAGATGGCTTCAAAACGGNTCAACAAGGAGTTGAAGGACCT
ACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACA
TGTTCCATTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCT
GGGGGTGTATTTNTTGTATCCATTCATTTCCCACCTGATTATCCATTCAA
GCACCGAGGC
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