C21901

Overview
NameC21901
Unique NameC21901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length260
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.935e-14
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            ++KR  KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F PDYPFK
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 117          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            ++KR  KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F  DYPFK
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFK 123          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            ++KR  KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F  DYPFK
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFK 123          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            ++KR  KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F  DYPFK
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFK 123          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.766e-13
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA K  +KE  +L +DP   CSAGPV DDM HWQATI  P+DS + GGVF   + FP DY FK
Sbjct:    1 MALKLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFF--LKFPSDYLFK 61          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            A KR  KE+ D+ K PP+ CSA  V D++  W+AT+ GP  SPF  GVF + I  P DYPFK
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFK 64          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.989e-12
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 3
Query:   57 SQMASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFKHRG 260
            S  A +R  ++ K +Q DPPA  SA PVAD++  W A I+GP+D+PF  G F + +HF   YP K  G
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPG 69          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.989e-12
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 3
Query:   57 SQMASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFKHRG 260
            S  A +R  ++ K +Q DPPA  SA PVAD++  W A I+GP+D+PF  G F + +HF   YP K  G
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPG 69          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.615e-11
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 3
Query:   66 ASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            A KR   + K LQKDPP   S  P  +++ HW A I GP D+P+ GG F +++HF  DYP K
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNK 66          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.826e-11
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 3
Query:   57 SQMASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            S  A +R  ++ K +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + +HF   YP K
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNK 66          
The following BLAST results are available for this feature:
BLAST of C21901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UB2E2_HUMAN1.935e-1451.61Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E3_MOUSE1.638e-1350.00Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN1.638e-1350.00Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN1.638e-1350.00Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
U2D2L_HUMAN4.766e-1357.14Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBCB_DICDI4.035e-1251.61Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC2_EMENI8.989e-1245.59Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU8.989e-1245.59Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC3_ARATH2.615e-1146.77Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_NEUCR5.826e-1144.62Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionC21901 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSO-3R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21901 ID=C21901; Name=C21901; organism=Citrus sinensis; type=EST; length=260bp
GGCACGAGAAATAACACCAGACCCAAACTNTCAGGCCACAAAGTTTGTTG
AGAAATTCCCAGATGGCTTCAAAACGGNTCAACAAGGAGTTGAAGGACCT
ACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACA
TGTTCCATTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCT
GGGGGTGTATTTNTTGTATCCATTCATTTCCCACCTGATTATCCATTCAA
GCACCGAGGC
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