C21901

Overview
NameC21901
Unique NameC21901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length260
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.826e-11
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 3 
Query:   57 SQMASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            S  +S+R  KE  DL++ P        V D++FHW  T +GPSDS +AGG F  S+ FP DYPF+
Sbjct:    5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQ 69
The following BLAST results are available for this feature:
BLAST of C21901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UBC14_SCHPO5.826e-1146.15Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionC21901 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSO-3R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21901 ID=C21901; Name=C21901; organism=Citrus sinensis; type=EST; length=260bp
GGCACGAGAAATAACACCAGACCCAAACTNTCAGGCCACAAAGTTTGTTG
AGAAATTCCCAGATGGCTTCAAAACGGNTCAACAAGGAGTTGAAGGACCT
ACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACA
TGTTCCATTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCT
GGGGGTGTATTTNTTGTATCCATTCATTTCCCACCTGATTATCCATTCAA
GCACCGAGGC
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