C21903

Overview
NameC21903
Unique NameC21903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length216
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9307 contig Csv1_Contig9307:31..246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14334_SOLLC (14-3-3 protein 4 OS=Solanum lycopersicum GN=TFT4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.765e-12
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M   +RE+ VYLAKLAEQAERYEEM+ FM+  V       ELTVEERNLLSVA KNVI
Sbjct:    1 MADSSREENVYLAKLAEQAERYEEMIEFMEK-VAKTADVEELTVEERNLLSVAYKNVI 57          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433C_TOBAC (14-3-3-like protein C OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.305e-12
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 3
Query:   39 AMGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            A+    RE+ VY+AKLAEQAERYEEMV FM+  V++   + ELTVEERNLLSVA KNVI
Sbjct:    2 AVAPTAREENVYMAKLAEQAERYEEMVEFMEK-VSNSLGSEELTVEERNLLSVAYKNVI 59          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433A_HORVU (14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.305e-12
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            TRE+ VY+AKLAEQAERYEEMV FM+  V       ELTVEERNLLSVA KNVI
Sbjct:    7 TREENVYMAKLAEQAERYEEMVEFMEK-VAKTADVGELTVEERNLLSVAYKNVI 59          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14332_SOLLC (14-3-3 protein 2 OS=Solanum lycopersicum GN=TFT2 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.305e-12
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            RE+ VY+AKLAEQAERYEEMV FM+ + TS   + ELTVEERNLLSVA KNVI
Sbjct:    3 REENVYMAKLAEQAERYEEMVQFMEKVSTS-LGSEELTVEERNLLSVAYKNVI 54          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433_OENEH (14-3-3-like protein OS=Oenothera elata subsp. hookeri PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.010e-12
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            RE+ VYLAKLAEQAERYEEMV FM+  V +   + ELTVEERNLLSVA KNVI
Sbjct:    8 REENVYLAKLAEQAERYEEMVEFMEK-VCAAADSEELTVEERNLLSVAYKNVI 59          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14337_ARATH (14-3-3-like protein GF14 nu OS=Arabidopsis thaliana GN=GRF7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.010e-12
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VYLAKLAEQAERYEEMV FM+  V       ELTVEERNLLSVA KNVI
Sbjct:    4 SREENVYLAKLAEQAERYEEMVEFMEK-VAKTVDTDELTVEERNLLSVAYKNVI 56          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14335_ARATH (14-3-3-like protein GF14 upsilon OS=Arabidopsis thaliana GN=GRF5 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.010e-12
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VYLAKLAEQAERYEEMV FM+  V       ELTVEERNLLSVA KNVI
Sbjct:    6 SREENVYLAKLAEQAERYEEMVEFMEK-VAKTVETEELTVEERNLLSVAYKNVI 58          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14331_ARATH (14-3-3-like protein GF14 chi OS=Arabidopsis thaliana GN=GRF1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.010e-12
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 3
Query:   42 MGTP----TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M TP     R+++VY+AKLAEQAERYEEMV FM+  V       ELTVEERNLLSVA KNVI
Sbjct:    1 MATPGASSARDEFVYMAKLAEQAERYEEMVEFMEK-VAKAVDKDELTVEERNLLSVAYKNVI 61          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433_MESCR (14-3-3-like protein OS=Mesembryanthemum crystallinum GN=GBF PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.931e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VY+AKLAEQAERYEEMV FM+  V   T   EL+VEERNLLSVA KNVI
Sbjct:    6 SREENVYMAKLAEQAERYEEMVEFMEK-VAKMTDTEELSVEERNLLSVAYKNVI 58          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433B_HORVU (14-3-3-like protein B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.931e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +RE+ VY+AKLAEQAERYEEMV FM+  V     + ELTVEERNLLSVA KNVI
Sbjct:    8 SREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVI 60          
The following BLAST results are available for this feature:
BLAST of C21903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
14334_SOLLC1.765e-1267.2414-3-3 protein 4 OS=Solanum lycopersicum GN=TFT4 P... [more]
1433C_TOBAC2.305e-1266.1014-3-3-like protein C OS=Nicotiana tabacum PE=1 SV... [more]
1433A_HORVU2.305e-1272.2214-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1[more]
14332_SOLLC2.305e-1273.5814-3-3 protein 2 OS=Solanum lycopersicum GN=TFT2 P... [more]
1433_OENEH3.010e-1273.5814-3-3-like protein OS=Oenothera elata subsp. hook... [more]
14337_ARATH3.010e-1272.2214-3-3-like protein GF14 nu OS=Arabidopsis thalian... [more]
14335_ARATH3.010e-1272.2214-3-3-like protein GF14 upsilon OS=Arabidopsis th... [more]
14331_ARATH3.010e-1264.5214-3-3-like protein GF14 chi OS=Arabidopsis thalia... [more]
1433_MESCR3.931e-1270.3714-3-3-like protein OS=Mesembryanthemum crystallin... [more]
1433B_HORVU3.931e-1270.3714-3-3-like protein B OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC21903 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-32R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21903 ID=C21903; Name=C21903; organism=Citrus sinensis; type=EST; length=216bp
GGCACGAGTCCAGTTAACTTTACAGTTTCTGCAATTCTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCNGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAANTTCATGGACAGCCTCGTCACTTCCNCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTTCTCTCCGTTGCT
NACAAGAACGTCATCG
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