C21905

Overview
NameC21905
Unique NameC21905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_SYNR3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain RCC307) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.032e-20
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            + PG  AVAIKN+T+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD L +   L+ L+
Sbjct:   36 HEPGKRAVAIKNITLNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLRITCELLSLK 123          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_PROM0 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9301) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.032e-20
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNASDSKDXGK 306
            PG  AVA+KNVT+N+  F GHFP+RP+MPGVL+VE+MAQVGG+++ Q P++   +  F FAGI+ V+FRKPV+ GD L++   L+ ++     K  G+
Sbjct:   38 PGERAVAVKNVTLNEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMPDL--PKGLFVFAGINNVKFRKPVVPGDQLIISCELLSIKRQRFGKVKGE 133          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_CARHZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.348e-20
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNA 282
            PG  AV IKNVTIN+ FF GHFP RPIMPGVL++EAMAQVG + +L  E    +    FAGID  RFRKPV+ GD +V  + L+K++ +
Sbjct:   32 PGEKAVGIKNVTINEPFFQGHFPGRPIMPGVLLLEAMAQVGAVAILTDERYAGKLPM-FAGIDGARFRKPVLPGDQVVFEVELLKIKGS 119          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_PROM5 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9515) GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.760e-20
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNASDSKDXGK 306
            PG  AVA+KNVTIN+  F GHFP+RP+MPGVL+VE+MAQVGG+++ Q P++   +  F FAGI+ V+FR+PV+ GD LV+   L+ ++     K  G+
Sbjct:   38 PGHKAVALKNVTINEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMPDL--PKGLFVFAGINNVKFRRPVLPGDQLVITCELLSIKRQRFGKVKGE 133          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_ACAM1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acaryochloris marina (strain MBIC 11017) GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.002e-20
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            Y     AV IKNVT+N+ FF GHFP RP+MPGVL+VEAMAQVGG+V+ Q     S + F F GIDKVR R+ V+ GD LV+    + L+
Sbjct:   39 YKESERAVGIKNVTMNEEFFQGHFPGRPLMPGVLIVEAMAQVGGIVLAQLPDIPSGKLFVFTGIDKVRIRRSVVPGDQLVITAEFLSLK 127          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9311) GN=fabZ PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.921e-20
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            PG  AVA+KNVT N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD L +   L+ L+
Sbjct:   40 PGERAVALKNVTFNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLRITCELLSLK 125          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: LPXZ_CHLTE (Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidum GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.121e-20
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   31 VAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            V+IKNVT+N+ FF GHFP  PIMPGVL++EAMAQ GG++ML  +         F GIDK RFRKPV+ GDTLV+   +  ++
Sbjct:  355 VSIKNVTMNEPFFQGHFPGNPIMPGVLIIEAMAQTGGIMMLNGKENIKESVVFFMGIDKARFRKPVLPGDTLVIEAVMTNMR 436          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_CLOPS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens (strain SM101 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.688e-20
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   31 VAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNA 282
            VA KNVTIN+ FF GHFPD P+MPGVL+VEA+AQ G + +L  E    +  F FAGIDKVRF+K V+ GDTL + + ++KL+ +
Sbjct:   32 VAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTPF-FAGIDKVRFKKQVLPGDTLRLEVEIIKLRGS 114          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_CLOPE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens GN=fabZ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.688e-20
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   31 VAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNA 282
            VA KNVTIN+ FF GHFPD P+MPGVL+VEA+AQ G + +L  E    +  F FAGIDKVRF+K V+ GDTL + + ++KL+ +
Sbjct:   32 VAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTPF-FAGIDKVRFKKQVLPGDTLRLEVEIIKLRGS 114          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_CLOP1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.688e-20
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   31 VAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNA 282
            VA KNVTIN+ FF GHFPD P+MPGVL+VEA+AQ G + +L  E    +  F FAGIDKVRF+K V+ GDTL + + ++KL+ +
Sbjct:   32 VAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTPF-FAGIDKVRFKKQVLPGDTLRLEVEIIKLRGS 114          
The following BLAST results are available for this feature:
BLAST of C21905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNR31.032e-2056.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROM01.032e-2050.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CARHZ1.348e-2056.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROM51.760e-2051.02(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACAM13.002e-2055.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNS33.921e-2057.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_CHLTE5.121e-2054.88Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidu... [more]
FABZ_CLOPS6.688e-2055.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOPE6.688e-2055.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOP16.688e-2055.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionC21905 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSM-16R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21905 ID=C21905; Name=C21905; organism=Citrus sinensis; type=EST; length=312bp
GGCACGAGATACAATCCAGGAGTTTCAGCTGTTGCTATTAAGAATGTTAC
TATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAGGCCAATTATGC
CCGGTGTTCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATG
CTGCAACCAGAAGTGGGAGGCTCTCGTGAAAATTTCTNCTTTGCTGGAAT
TGATAAAGTAAGATTCAGGAAACCAGTGATTGCAGGTGACACTTTGGTCA
TGAGAATGACACTTGTCAAGCTACAGAACGCTTCGGATAGCAAAGATGNA
GGGAAGTTATGT
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