C21905

Overview
NameC21905
Unique NameC21905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_CLOBA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=fabZ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.084e-13
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   40 KNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            KNV+ N+ FF GH+P  PIMPGVL +EA+AQ G + +L  E    +    FAG +KVRF+  V+ GD L +   +VKL+
Sbjct:   38 KNVSANEQFFQGHYPQEPIMPGVLQIEALAQAGAVAILSMEKFKGKTPL-FAGTNKVRFKAKVVPGDRLDLYCEIVKLK 115          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_ANADE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=fabZ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.084e-13
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   31 VAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGL---VMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNA 282
            VA+K VT+N+ FF GHFP +P+MPGVL++EA+AQ   L   + L+P+    +  +   GID  RFR+PV+ GD L + + + K + A
Sbjct:   42 VALKGVTMNEPFFQGHFPAQPVMPGVLILEALAQAAALLATMSLKPDEVKDKITY-LMGIDGARFRRPVVPGDRLELEVEVTKQKGA 127          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_PSYIN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Psychromonas ingrahamii (strain 37) GN=fabZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.722e-13
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVML----QPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVK 270
            Y PG     IKN++ N+  F GHFPD PI PGV+++E++AQ  G++      +P V    E +  A +DKVRFR+PVI GD L + +  +K
Sbjct:   32 YVPGKRLHGIKNISFNEPQFTGHFPDTPIYPGVMILESLAQATGVLAFATYGKPAV---NELYFLASMDKVRFRRPVIPGDVLDLEVIYLK 119          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_MARAV ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fabZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.722e-13
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    4 TRYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGL-----VMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLV 267
            T    G S    KNV+ N+ FF GHFPD PIMPGVL++EAMAQ+ G+     V  +P  G  +     AG  K RF++PV+ GD L M    +
Sbjct:   24 TEVEKGKSIKGYKNVSFNEPFFTGHFPDNPIMPGVLIIEAMAQLSGILGFVTVERKPSDGVVQ---YLAGSSKARFKRPVLPGDRLDMESEFI 113          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_HELHP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Helicobacter hepaticus GN=fabZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.722e-13
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   34 AIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVG-----GSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVK 270
            A KNVTIN+  F GHFP++PI PGV+ +E MAQ GGL+      G        +   F  ID V+FR PV+ GD LV  + ++K
Sbjct:   52 AYKNVTINEEVFLGHFPNKPIYPGVMQIEGMAQAGGLLAFVSMFGDNVAEAKNKIVYFMTIDNVKFRIPVVPGDRLVYELKVLK 135          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_HALHL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=fabZ PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.722e-13
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FXFAGIDKVRFRKPVIAGDTL 246
            + P     +IKNVTIN+ FF GHFP +P+MPGVL++E++AQ  G++  +       +N      GIDK RF++PV  GD L
Sbjct:   34 FQPHEHLASIKNVTINEPFFVGHFPQKPVMPGVLILESLAQACGMLAFKSVQDTLTDNDVLYLVGIDKARFKRPVQPGDQL 114          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_CLOB8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=fabZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.722e-13
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   40 KNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            KNV+ N+ FF GH+P+ PIMPGVL VEA+AQ G + +L  E    +    FAGI+KVRF+  V+ GD L +   ++K++
Sbjct:   38 KNVSANEAFFQGHYPEEPIMPGVLQVEALAQTGTVAILSMERFKGKTPL-FAGINKVRFKGKVVPGDKLDLYCEIIKIK 115          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_RICBR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rickettsia bellii (strain RML369-C) GN=fabZ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.554e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   13 NPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTL 264
            +P  S   IKNVT+N+  F GHFP RP+MPGVLMVEAMAQ+  +++ +       +      I+  +FRK V  GDT+ +  T+
Sbjct:   28 DPNKSITGIKNVTVNEPQFTGHFPARPVMPGVLMVEAMAQLAAILVAKSLGSTKNKEVFLMAIENSKFRKVVQPGDTMHIHATI 111          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_METRJ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=fabZ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.554e-13
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   25 SAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ--PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMT 261
            S V IKNVT N+  F GHFPD P+ PGVL++E MAQ  G +  +     G + +   F  IDK +FRKPV  GD +   MT
Sbjct:   44 SCVGIKNVTANEPQFMGHFPDMPVFPGVLLIEGMAQTAGAICCRHIRADGRNTKQVFFMTIDKCKFRKPVTPGDQVRFHMT 124          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_IDILO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Idiomarina loihiensis GN=fabZ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.554e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   34 AIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLV--MLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVK 270
            AIKNVT N+  F GHFP +PI PGVL++EA+AQ  GL+   +      + + + FAGID  RF++ VI GDT+   +T  K
Sbjct:   40 AIKNVTFNEPMFNGHFPAKPIFPGVLLLEAIAQACGLLGFKITESKKNANDLYLFAGIDNARFKRQVIPGDTVDFFVTFEK 120          
The following BLAST results are available for this feature:
BLAST of C21905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_CLOBA2.084e-1346.84(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANADE2.084e-1343.68(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSYIN2.722e-1342.86(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MARAV2.722e-1344.09(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_HELHP2.722e-1345.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_HALHL2.722e-1344.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOB82.722e-1346.84(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RICBR3.554e-1342.86(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_METRJ3.554e-1346.91(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_IDILO3.554e-1346.91(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionC21905 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSM-16R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21905 ID=C21905; Name=C21905; organism=Citrus sinensis; type=EST; length=312bp
GGCACGAGATACAATCCAGGAGTTTCAGCTGTTGCTATTAAGAATGTTAC
TATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAGGCCAATTATGC
CCGGTGTTCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATG
CTGCAACCAGAAGTGGGAGGCTCTCGTGAAAATTTCTNCTTTGCTGGAAT
TGATAAAGTAAGATTCAGGAAACCAGTGATTGCAGGTGACACTTTGGTCA
TGAGAATGACACTTGTCAAGCTACAGAACGCTTCGGATAGCAAAGATGNA
GGGAAGTTATGT
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