C21905

Overview
NameC21905
Unique NameC21905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_RUBXD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGL-VMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            PGV AV +KNVT N+ FF GHFP  P+MPGVL+VEAMAQVG + VM   E  G      FAGID VRFR+ V+ GD L M + + +L+
Sbjct:   31 PGVRAVGVKNVTQNEPFFQGHFPGYPVMPGVLIVEAMAQVGAVGVMAVEEYRGRLA--LFAGIDGVRFRRQVVPGDALRMEVEIDRLR 116          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_BORPE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bordetella pertussis GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVG-----GSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKL 273
            PG S VAIKNV+IN+ FF GHFP  P+MPGVL+VEAMAQ   L     E G     G++  +   GID  RFRKPV+ GD L + +   +L
Sbjct:   29 PGKSIVAIKNVSINEPFFTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERL 119          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_BORPA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bordetella parapertussis GN=fabZ PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVG-----GSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKL 273
            PG S VAIKNV+IN+ FF GHFP  P+MPGVL+VEAMAQ   L     E G     G++  +   GID  RFRKPV+ GD L + +   +L
Sbjct:   29 PGKSIVAIKNVSINEPFFTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERL 119          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_BORBR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bordetella bronchiseptica GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVG-----GSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKL 273
            PG S VAIKNV+IN+ FF GHFP  P+MPGVL+VEAMAQ   L     E G     G++  +   GID  RFRKPV+ GD L + +   +L
Sbjct:   29 PGKSIVAIKNVSINEPFFTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERL 119          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_ACIAD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acinetobacter sp. (strain ADP1) GN=fabZ PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   31 VAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLV--MLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLV 267
            V  KNV+IN+ FF GHFPD PIMPGVL+VEA+AQ+ G++  ++  E       F FAG +KVRF+K V+AGD LV++  LV
Sbjct:   33 VGYKNVSINEEFFQGHFPDYPIMPGVLIVEALAQISGILGFIMNNETPKPGSLFLFAGAEKVRFKKQVVAGDQLVLKAELV 113          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_STRS2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus suis (strain 98HAH33) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   31 VAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVK 270
            VA+KNVTIN+ FF GHFPD P+MPGVL++EA+AQ  G++ L  E    +  F +AG+DKV+F+K V+ GD L+M    VK
Sbjct:   32 VALKNVTINEPFFNGHFPDYPVMPGVLIMEALAQTAGVLELSKEENKGKLVF-YAGMDKVKFKKQVVPGDQLIMTAKFVK 110          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_PELCD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLV 267
            PG  AV IKNVTIN+ FF GH+P  PIMPGVL++EAMAQVGG V          +   F GI+K RFR+PV  GD L +++ L+
Sbjct:   29 PGKRAVGIKNVTINEPFFQGHYPGHPIMPGVLIIEAMAQVGGAVAAITAGDKDDQVPYFTGINKARFRRPVGPGDVLQLQLELL 112          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_OENOB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=fabZ PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   19 GVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQN 279
            G   +A KNVTIN+ FF GHFP  P+MPGVL+VEA+AQ G + +L+ +    +  + F G+DKV+FR+ V  GDTL + +TL KL++
Sbjct:   28 GERILAQKNVTINEEFFQGHFPGNPVMPGVLIVEALAQAGAIALLKMDRFAGKTPY-FGGVDKVKFRRMVRPGDTLTLNVTLDKLKD 113          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_METCA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Methylococcus capsulatus GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   16 PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ--PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVK 270
            PG   +AIKNVT N+ FF GHFP  PIMPGVL++EA+AQ  GL+  +  P+V G    +   G+DKVRF++PV+ GD L +  T ++
Sbjct:   27 PGKRLLAIKNVTYNEPFFQGHFPRVPIMPGVLIIEALAQTTGLLASETAPDVLGKGATYYLVGLDKVRFKRPVVPGDQLRLEATYLR 113          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_LISW6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   19 GVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNA 282
            G    AIKNVT N+ FF GHFP+ P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGID  RF++ VI GD L++   + +++ A
Sbjct:   29 GKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIGL-FAGIDGCRFKRQVIPGDQLLLEAEITRMRGA 115          
The following BLAST results are available for this feature:
BLAST of C21905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_RUBXD1.068e-1755.68(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BORPE1.068e-1750.55(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BORPA1.068e-1750.55(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BORBR1.068e-1750.55(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACIAD1.068e-1754.32(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRS21.395e-1753.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PELCD1.395e-1753.57(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_OENOB1.395e-1749.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_METCA1.395e-1749.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LISW61.395e-1747.73(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionC21905 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSM-16R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21905 ID=C21905; Name=C21905; organism=Citrus sinensis; type=EST; length=312bp
GGCACGAGATACAATCCAGGAGTTTCAGCTGTTGCTATTAAGAATGTTAC
TATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAGGCCAATTATGC
CCGGTGTTCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATG
CTGCAACCAGAAGTGGGAGGCTCTCGTGAAAATTTCTNCTTTGCTGGAAT
TGATAAAGTAAGATTCAGGAAACCAGTGATTGCAGGTGACACTTTGGTCA
TGAGAATGACACTTGTCAAGCTACAGAACGCTTCGGATAGCAAAGATGNA
GGGAAGTTATGT
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