CA588029

Overview
NameCA588029
Unique NameCA588029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7794 contig Csv1_Contig7794:216..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJA (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0331 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.152e-19
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   55 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 288
            P+  LK +W+E ++ +A+DQ +      PL++YFFWPR DAWE+LK  LESK WIS++  I LLNQAT++IN WQ  G
Sbjct:    2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTRYFFWPRDDAWEQLKAELESKTWISEEDRITLLNQATELINYWQNGG 78          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_EUGST (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena stellata GN=ycf65 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   64 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 282
            +LKF+W+EK++ + LDQ I G  T P++++FFWP+ DAWEE+K  LE K WI Q  ++ILLNQ T++IN WQ+
Sbjct:    5 ILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVILLNQITEVINYWQE 76          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_PROMP (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 6.262e-19
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   28 GVSVKQLEKP---RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 288
            GV      KP   R ++K +W+  N+ LA+DQ + G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+    + +LN+AT++IN WQ+ G
Sbjct:   17 GVPTGYTPKPDEGRFIIKILWLPDNVALAVDQIVGG-GSSPLTAYYFWPRDDAWEKLKSELENKSWITDNERVEILNKATEVINYWQEEG 105          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_GRATL (Probable 30S ribosomal protein 3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=ycf65 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.262e-19
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 294
            +   K +W+E NI +A+D  I G    PL+ YFFWPR DAWEELK  LESKPWI++   + LLN+ T+IIN WQ+   N
Sbjct:    3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKVDLLNKTTEIINFWQEKEKN 80          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJB (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. GN=CYB_1711 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   55 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 294
            P+  LK +W+E ++ +A+DQ +      PL+ YFFWPR DAWE+LK  LESK WIS+   I LLN+AT++IN WQ  G N
Sbjct:    2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTHYFFWPRDDAWEQLKAELESKTWISEVDRIELLNRATELINYWQNGGRN 80          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_SYNY3 (Probable 30S ribosomal protein PSRP-3 OS=Synechocystis sp. (strain PCC 6803) GN=slr0923 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.395e-18
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   64 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQ 279
            +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++LK  LE+K WI++   I +LNQAT++IN WQ
Sbjct:   15 ILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQ 85          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_PROMM (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT_1454 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.380e-18
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   49 EKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 288
            ++ R +LK +W+  N+ LA+DQ + G G  PL+ YFFWPR+DAWE LK  LE K WI+    + +LN+AT++IN WQ+ G
Sbjct:   27 DEGRFLLKILWLPDNVALAVDQIVGG-GPSPLTAYFFWPREDAWETLKGELEGKSWITDNERVEVLNKATEVINYWQEEG 105          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_EUGVI (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.542e-17
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 282
            + VLKF+W+++++ ++LDQ I G    PL++++FWP+ DAWEE++  LESK WI+    I+LLNQ T+IIN WQ+
Sbjct:    3 KFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESILLLNQVTEIINDWQE 76          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMU (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena mutabilis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 285
            R VLKF+ ++K I + LDQ I      PL++YFFWP++DAWE++K  +++  WI  K  + +LN+ T++IN W++S
Sbjct:    3 RFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAVNILNRITEVINFWEES 78          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_CYACA (Probable 30S ribosomal protein 3, chloroplastic OS=Cyanidium caldarium GN=ycf65 PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   67 LKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 285
            +K +W+  NI +A+D+ I G    P++ Y+FWPR DAWE+LK  L+S+P +  K  +++LNQ T II+ WQ++
Sbjct:    6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVILNQVTRIIDYWQEN 77          
The following BLAST results are available for this feature:
BLAST of CA588029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_SYNJA2.152e-1952.56Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_EUGST2.811e-1953.42Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_PROMP6.262e-1945.56Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_GRATL6.262e-1951.90Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_SYNJB1.068e-1851.25Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_SYNY31.395e-1852.78Probable 30S ribosomal protein PSRP-3 OS=Synechocy... [more]
RRP3_PROMM2.380e-1848.75Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_EUGVI1.542e-1749.33Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_EUGMU1.886e-1543.42Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_CYACA3.556e-1443.84Probable 30S ribosomal protein 3, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionGS1410 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD3.2 5 similar to plastid-specific ribosomal protein [Spinacia oleracea] (AF239218), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588029 ID=CA588029; Name=CA588029; organism=Citrus sinensis; type=EST; length=475bp
GCAACCCCAGTAGAAACTAAGAAGGCGGGGGTGTCAGTGAAGCAATTGGA
GAAGCCAAGGCTGGTATTGAAGTTTATATGGATGGAGAAGAACATTGGTC
TAGCTCTTGACCAGACGATACCTGGGTATGGCACCATTCCTTTGAGTCAA
TACTTCTTTTGGCCGAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCT
TGAGAGCAAACCCTGGATTTCCCAGAAAATGATGATTATACTTCTAAATC
AGGCCACTGATATTATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACT
ACTTAGTTGGATGAAAATTCCGGTTTCTCCGTGAGTTCTCATCGTTTTTG
TATTTCAGTTATTGGATTTGATTTGTATAATTGAAACCTTGTTCATATCT
GCATTACATCGGACACGAGTTGGCTCTGTAATTTGGTTGGTGTTGGCAAA
TTTTTTAATTAATGGGCGTAATGAA
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